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PRAMEF14 (PRAME family member 14)

Identity

Other alias-
HGNC (Hugo) PRAMEF14
LocusID (NCBI) 729528
Atlas_Id 56924
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13341892 and ends at 13347134 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF14   13576
Cards
Entrez_Gene (NCBI)PRAMEF14  729528  PRAME family member 14
Aliases
GeneCards (Weizmann)PRAMEF14
Ensembl hg19 (Hinxton)ENSG00000204481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204481 [Gene_View]  ENSG00000204481 [Sequence]  chr1:13341892-13347134 [Contig_View]  PRAMEF14 [Vega]
ICGC DataPortalENSG00000204481
TCGA cBioPortalPRAMEF14
AceView (NCBI)PRAMEF14
Genatlas (Paris)PRAMEF14
WikiGenes729528
SOURCE (Princeton)PRAMEF14
Genetics Home Reference (NIH)PRAMEF14
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF14  -     chr1:13341892-13347134 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF14  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF14 - 1p36.21 [CytoView hg19]  PRAMEF14 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF14 [Mapview hg19]  PRAMEF14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA813530 BX092416
RefSeq transcript (Entrez)NM_001024661 NM_001099854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF14
Cluster EST : UnigeneHs.745511 [ NCBI ]
CGAP (NCI)Hs.745511
Alternative Splicing GalleryENSG00000204481
Gene ExpressionPRAMEF14 [ NCBI-GEO ]   PRAMEF14 [ EBI - ARRAY_EXPRESS ]   PRAMEF14 [ SEEK ]   PRAMEF14 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729528
GTEX Portal (Tissue expression)PRAMEF14
Human Protein AtlasENSG00000204481-PRAMEF14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SWL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SWL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SWL7
Splice isoforms : SwissVarQ5SWL7
PhosPhoSitePlusQ5SWL7
Domains : Interpro (EBI)LRR_dom_sf    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF14
DMDM Disease mutations729528
Blocks (Seattle)PRAMEF14
SuperfamilyQ5SWL7
Human Protein Atlas [tissue]ENSG00000204481-PRAMEF14 [tissue]
Peptide AtlasQ5SWL7
IPIIPI00514500   IPI00844281   
Protein Interaction databases
DIP (DOE-UCLA)Q5SWL7
IntAct (EBI)Q5SWL7
FunCoupENSG00000204481
BioGRIDPRAMEF14
STRING (EMBL)PRAMEF14
ZODIACPRAMEF14
Ontologies - Pathways
QuickGOQ5SWL7
Ontology : AmiGOcytoplasm  positive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIcytoplasm  positive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF14
Atlas of Cancer Signalling NetworkPRAMEF14
Wikipedia pathwaysPRAMEF14
Orthology - Evolution
OrthoDB729528
GeneTree (enSembl)ENSG00000204481
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF14
HOVERGENQ5SWL7
HOGENOMQ5SWL7
Homologs : HomoloGenePRAMEF14
Homology/Alignments : Family Browser (UCSC)PRAMEF14
Gene fusions - Rearrangements
Fusion : QuiverPRAMEF14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF14
dbVarPRAMEF14
ClinVarPRAMEF14
1000_GenomesPRAMEF14 
Exome Variant ServerPRAMEF14
ExAC (Exome Aggregation Consortium)ENSG00000204481
GNOMAD BrowserENSG00000204481
Varsome BrowserPRAMEF14
Genetic variants : HAPMAP729528
Genomic Variants (DGV)PRAMEF14 [DGVbeta]
DECIPHERPRAMEF14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF14 
Mutations
ICGC Data PortalPRAMEF14 
TCGA Data PortalPRAMEF14 
Broad Tumor PortalPRAMEF14
OASIS PortalPRAMEF14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF14
DgiDB (Drug Gene Interaction Database)PRAMEF14
DoCM (Curated mutations)PRAMEF14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF14 (select a term)
intoGenPRAMEF14
Cancer3DPRAMEF14(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRAMEF14
MedgenPRAMEF14
Genetic Testing Registry PRAMEF14
NextProtQ5SWL7 [Medical]
TSGene729528
GENETestsPRAMEF14
Target ValidationPRAMEF14
Huge Navigator PRAMEF14 [HugePedia]
snp3D : Map Gene to Disease729528
BioCentury BCIQPRAMEF14
ClinGenPRAMEF14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729528
Chemical/Pharm GKB GenePA145148171
Clinical trialPRAMEF14
Miscellaneous
canSAR (ICR)PRAMEF14 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF14
EVEXPRAMEF14
GoPubMedPRAMEF14
iHOPPRAMEF14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:32:01 CET 2018

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