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PRAMEF15 (PRAME family member 15)

Identity

Alias_symbol (synonym)OTTHUMG00000007921
Other alias-
HGNC (Hugo) PRAMEF15
LocusID (NCBI) 653619
Atlas_Id 56445
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13315581 and ends at 13322595 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF15   26764
Cards
Entrez_Gene (NCBI)PRAMEF15  653619  PRAME family member 15
Aliases
GeneCards (Weizmann)PRAMEF15
Ensembl hg19 (Hinxton)ENSG00000204501 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204501 [Gene_View]  chr1:13315581-13322595 [Contig_View]  PRAMEF15 [Vega]
ICGC DataPortalENSG00000204501
TCGA cBioPortalPRAMEF15
AceView (NCBI)PRAMEF15
Genatlas (Paris)PRAMEF15
WikiGenes653619
SOURCE (Princeton)PRAMEF15
Genetics Home Reference (NIH)PRAMEF15
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF15  -     chr1:13315581-13322595 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF15  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF15 - 1p36.21 [CytoView hg19]  PRAMEF15 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF15 [Mapview hg19]  PRAMEF15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124292 BC101343 BC137391 BC171794
RefSeq transcript (Entrez)NM_001098376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF15
Cluster EST : UnigeneHs.631873 [ NCBI ]
CGAP (NCI)Hs.631873
Alternative Splicing GalleryENSG00000204501
Gene ExpressionPRAMEF15 [ NCBI-GEO ]   PRAMEF15 [ EBI - ARRAY_EXPRESS ]   PRAMEF15 [ SEEK ]   PRAMEF15 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653619
GTEX Portal (Tissue expression)PRAMEF15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWM5
Splice isoforms : SwissVarQ5VWM5
PhosPhoSitePlusQ5VWM5
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF15
DMDM Disease mutations653619
Blocks (Seattle)PRAMEF15
SuperfamilyQ5VWM5
Human Protein AtlasENSG00000204501
Peptide AtlasQ5VWM5
Protein Interaction databases
DIP (DOE-UCLA)Q5VWM5
IntAct (EBI)Q5VWM5
FunCoupENSG00000204501
BioGRIDPRAMEF15
STRING (EMBL)PRAMEF15
ZODIACPRAMEF15
Ontologies - Pathways
QuickGOQ5VWM5
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF15
Atlas of Cancer Signalling NetworkPRAMEF15
Wikipedia pathwaysPRAMEF15
Orthology - Evolution
OrthoDB653619
GeneTree (enSembl)ENSG00000204501
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF15
HOVERGENQ5VWM5
HOGENOMQ5VWM5
Homologs : HomoloGenePRAMEF15
Homology/Alignments : Family Browser (UCSC)PRAMEF15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF15 [hg38]/TD>
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF15
dbVarPRAMEF15
ClinVarPRAMEF15
1000_GenomesPRAMEF15 
Exome Variant ServerPRAMEF15
ExAC (Exome Aggregation Consortium)PRAMEF15 (select the gene name)
Genetic variants : HAPMAP653619
Genomic Variants (DGV)PRAMEF15 [DGVbeta]
DECIPHERPRAMEF15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF15 
Mutations
ICGC Data PortalPRAMEF15 
TCGA Data PortalPRAMEF15 
Broad Tumor PortalPRAMEF15
OASIS PortalPRAMEF15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF15
DgiDB (Drug Gene Interaction Database)PRAMEF15
DoCM (Curated mutations)PRAMEF15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF15 (select a term)
intoGenPRAMEF15
Cancer3DPRAMEF15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF15
Genetic Testing Registry PRAMEF15
NextProtQ5VWM5 [Medical]
TSGene653619
GENETestsPRAMEF15
Target ValidationPRAMEF15
Huge Navigator PRAMEF15 [HugePedia]
snp3D : Map Gene to Disease653619
BioCentury BCIQPRAMEF15
ClinGenPRAMEF15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653619
Chemical/Pharm GKB GenePA145148173
Clinical trialPRAMEF15
Miscellaneous
canSAR (ICR)PRAMEF15 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF15
EVEXPRAMEF15
GoPubMedPRAMEF15
iHOPPRAMEF15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:26:15 CEST 2017

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