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PRAMEF16 (PRAME family member 16)

Identity

Other alias-
HGNC (Hugo) PRAMEF16
LocusID (NCBI) 654348
Atlas_Id 72176
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13495254 and ends at 13498259 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF16   25767
Cards
Entrez_Gene (NCBI)PRAMEF16  654348  PRAME family member 16
Aliases
GeneCards (Weizmann)PRAMEF16
Ensembl hg19 (Hinxton) [Gene_View]  chr1:13495254-13498259 [Contig_View]  PRAMEF16 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:13495254-13498259 [Contig_View]  PRAMEF16 [Vega]
TCGA cBioPortalPRAMEF16
AceView (NCBI)PRAMEF16
Genatlas (Paris)PRAMEF16
WikiGenes654348
SOURCE (Princeton)PRAMEF16
Genetics Home Reference (NIH)PRAMEF16
Genomic and cartography
GoldenPath hg19 (UCSC)PRAMEF16  -     chr1:13495254-13498259 +  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRAMEF16  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblPRAMEF16 - 1p36.21 [CytoView hg19]  PRAMEF16 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF16 [Mapview hg19]  PRAMEF16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001045480
RefSeq genomic (Entrez)NC_000001 NT_004610
Consensus coding sequences : CCDS (NCBI)PRAMEF16
Cluster EST : UnigeneHs.684629 [ NCBI ]
CGAP (NCI)Hs.684629
Gene ExpressionPRAMEF16 [ NCBI-GEO ]   PRAMEF16 [ EBI - ARRAY_EXPRESS ]   PRAMEF16 [ SEEK ]   PRAMEF16 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654348
GTEX Portal (Tissue expression)PRAMEF16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWM1
Splice isoforms : SwissVarQ5VWM1
PhosPhoSitePlusQ5VWM1
Domains : Interpro (EBI)PRAME/Leu_rich_rep-con_p14    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF16
DMDM Disease mutations654348
Blocks (Seattle)PRAMEF16
SuperfamilyQ5VWM1
Peptide AtlasQ5VWM1
IPIIPI00642000   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWM1
IntAct (EBI)Q5VWM1
BioGRIDPRAMEF16
STRING (EMBL)PRAMEF16
ZODIACPRAMEF16
Ontologies - Pathways
QuickGOQ5VWM1
Ontology : AmiGOpositive regulation of cell proliferation  retinoic acid receptor binding  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  negative regulation of retinoic acid receptor signaling pathway  
Ontology : EGO-EBIpositive regulation of cell proliferation  retinoic acid receptor binding  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  negative regulation of retinoic acid receptor signaling pathway  
NDEx NetworkPRAMEF16
Atlas of Cancer Signalling NetworkPRAMEF16
Wikipedia pathwaysPRAMEF16
Orthology - Evolution
OrthoDB654348
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF16
HOVERGENQ5VWM1
HOGENOMQ5VWM1
Homologs : HomoloGenePRAMEF16
Homology/Alignments : Family Browser (UCSC)PRAMEF16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF16
dbVarPRAMEF16
ClinVarPRAMEF16
1000_GenomesPRAMEF16 
Exome Variant ServerPRAMEF16
ExAC (Exome Aggregation Consortium)PRAMEF16 (select the gene name)
Genetic variants : HAPMAP654348
Genomic Variants (DGV)PRAMEF16 [DGVbeta]
DECIPHER (Syndromes)1:13495254-13498259  
CONAN: Copy Number AnalysisPRAMEF16 
Mutations
ICGC Data PortalPRAMEF16 
TCGA Data PortalPRAMEF16 
Broad Tumor PortalPRAMEF16
OASIS PortalPRAMEF16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF16
DgiDB (Drug Gene Interaction Database)PRAMEF16
DoCM (Curated mutations)PRAMEF16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF16 (select a term)
intoGenPRAMEF16
Cancer3DPRAMEF16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF16
Genetic Testing Registry PRAMEF16
NextProtQ5VWM1 [Medical]
TSGene654348
GENETestsPRAMEF16
Huge Navigator PRAMEF16 [HugePedia]
snp3D : Map Gene to Disease654348
BioCentury BCIQPRAMEF16
ClinGenPRAMEF16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654348
Chemical/Pharm GKB GenePA145148186
Clinical trialPRAMEF16
Miscellaneous
canSAR (ICR)PRAMEF16 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF16
EVEXPRAMEF16
GoPubMedPRAMEF16
iHOPPRAMEF16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:31 CET 2017

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