Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRAMEF17 (PRAME family member 17)

Identity

Alias_symbol (synonym)OTTHUMG00000007909
Other alias-
HGNC (Hugo) PRAMEF17
LocusID (NCBI) 391004
Atlas_Id 56531
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13389632 and ends at 13392629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADGRA2 (8p11.23) / PRAMEF17 (1p36.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF17   29485
Cards
Entrez_Gene (NCBI)PRAMEF17  391004  PRAME family member 17
Aliases
GeneCards (Weizmann)PRAMEF17
Ensembl hg19 (Hinxton)ENSG00000204479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204479 [Gene_View]  chr1:13389632-13392629 [Contig_View]  PRAMEF17 [Vega]
ICGC DataPortalENSG00000204479
TCGA cBioPortalPRAMEF17
AceView (NCBI)PRAMEF17
Genatlas (Paris)PRAMEF17
WikiGenes391004
SOURCE (Princeton)PRAMEF17
Genetics Home Reference (NIH)PRAMEF17
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF17  -     chr1:13389632-13392629 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF17  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF17 - 1p36.21 [CytoView hg19]  PRAMEF17 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF17 [Mapview hg19]  PRAMEF17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC144662 BC146858
RefSeq transcript (Entrez)NM_001099851
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF17
Cluster EST : UnigeneHs.684629 [ NCBI ]
CGAP (NCI)Hs.684629
Alternative Splicing GalleryENSG00000204479
Gene ExpressionPRAMEF17 [ NCBI-GEO ]   PRAMEF17 [ EBI - ARRAY_EXPRESS ]   PRAMEF17 [ SEEK ]   PRAMEF17 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391004
GTEX Portal (Tissue expression)PRAMEF17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTA0
Splice isoforms : SwissVarQ5VTA0
PhosPhoSitePlusQ5VTA0
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF17
DMDM Disease mutations391004
Blocks (Seattle)PRAMEF17
SuperfamilyQ5VTA0
Human Protein AtlasENSG00000204479
Peptide AtlasQ5VTA0
IPIIPI00867602   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTA0
IntAct (EBI)Q5VTA0
FunCoupENSG00000204479
BioGRIDPRAMEF17
STRING (EMBL)PRAMEF17
ZODIACPRAMEF17
Ontologies - Pathways
QuickGOQ5VTA0
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF17
Atlas of Cancer Signalling NetworkPRAMEF17
Wikipedia pathwaysPRAMEF17
Orthology - Evolution
OrthoDB391004
GeneTree (enSembl)ENSG00000204479
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF17
HOVERGENQ5VTA0
HOGENOMQ5VTA0
Homologs : HomoloGenePRAMEF17
Homology/Alignments : Family Browser (UCSC)PRAMEF17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF17
dbVarPRAMEF17
ClinVarPRAMEF17
1000_GenomesPRAMEF17 
Exome Variant ServerPRAMEF17
ExAC (Exome Aggregation Consortium)PRAMEF17 (select the gene name)
Genetic variants : HAPMAP391004
Genomic Variants (DGV)PRAMEF17 [DGVbeta]
DECIPHERPRAMEF17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF17 
Mutations
ICGC Data PortalPRAMEF17 
TCGA Data PortalPRAMEF17 
Broad Tumor PortalPRAMEF17
OASIS PortalPRAMEF17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF17
DgiDB (Drug Gene Interaction Database)PRAMEF17
DoCM (Curated mutations)PRAMEF17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF17 (select a term)
intoGenPRAMEF17
Cancer3DPRAMEF17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF17
Genetic Testing Registry PRAMEF17
NextProtQ5VTA0 [Medical]
TSGene391004
GENETestsPRAMEF17
Target ValidationPRAMEF17
Huge Navigator PRAMEF17 [HugePedia]
snp3D : Map Gene to Disease391004
BioCentury BCIQPRAMEF17
ClinGenPRAMEF17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391004
Chemical/Pharm GKB GenePA145148194
Clinical trialPRAMEF17
Miscellaneous
canSAR (ICR)PRAMEF17 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF17
EVEXPRAMEF17
GoPubMedPRAMEF17
iHOPPRAMEF17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:04:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.