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PRAMEF18 (PRAME family member 18)

Identity

Other alias-
HGNC (Hugo) PRAMEF18
LocusID (NCBI) 391003
Atlas_Id 77763
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13222695 and ends at 13226154 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF18   30693
Cards
Entrez_Gene (NCBI)PRAMEF18  391003  PRAME family member 18
Aliases
GeneCards (Weizmann)PRAMEF18
Ensembl hg19 (Hinxton)ENSG00000279804 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279804 [Gene_View]  chr1:13222695-13226154 [Contig_View]  PRAMEF18 [Vega]
ICGC DataPortalENSG00000279804
TCGA cBioPortalPRAMEF18
AceView (NCBI)PRAMEF18
Genatlas (Paris)PRAMEF18
WikiGenes391003
SOURCE (Princeton)PRAMEF18
Genetics Home Reference (NIH)PRAMEF18
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF18  -     chr1:13222695-13226154 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF18  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF18 - 1p36.21 [CytoView hg19]  PRAMEF18 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF18 [Mapview hg19]  PRAMEF18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001099850
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187517 NW_012132914 NW_015495298
Consensus coding sequences : CCDS (NCBI)PRAMEF18
Alternative Splicing GalleryENSG00000279804
Gene ExpressionPRAMEF18 [ NCBI-GEO ]   PRAMEF18 [ EBI - ARRAY_EXPRESS ]   PRAMEF18 [ SEEK ]   PRAMEF18 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391003
GTEX Portal (Tissue expression)PRAMEF18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWM3
Splice isoforms : SwissVarQ5VWM3
PhosPhoSitePlusQ5VWM3
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF18
DMDM Disease mutations391003
Blocks (Seattle)PRAMEF18
SuperfamilyQ5VWM3
Human Protein AtlasENSG00000279804
Peptide AtlasQ5VWM3
IPIIPI00844589   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWM3
IntAct (EBI)Q5VWM3
FunCoupENSG00000279804
BioGRIDPRAMEF18
STRING (EMBL)PRAMEF18
ZODIACPRAMEF18
Ontologies - Pathways
QuickGOQ5VWM3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRAMEF18
Atlas of Cancer Signalling NetworkPRAMEF18
Wikipedia pathwaysPRAMEF18
Orthology - Evolution
OrthoDB391003
GeneTree (enSembl)ENSG00000279804
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF18
HOVERGENQ5VWM3
HOGENOMQ5VWM3
Homologs : HomoloGenePRAMEF18
Homology/Alignments : Family Browser (UCSC)PRAMEF18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF18
dbVarPRAMEF18
ClinVarPRAMEF18
1000_GenomesPRAMEF18 
Exome Variant ServerPRAMEF18
ExAC (Exome Aggregation Consortium)PRAMEF18 (select the gene name)
Genetic variants : HAPMAP391003
Genomic Variants (DGV)PRAMEF18 [DGVbeta]
DECIPHERPRAMEF18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF18 
Mutations
ICGC Data PortalPRAMEF18 
TCGA Data PortalPRAMEF18 
Broad Tumor PortalPRAMEF18
OASIS PortalPRAMEF18 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF18
DgiDB (Drug Gene Interaction Database)PRAMEF18
DoCM (Curated mutations)PRAMEF18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF18 (select a term)
intoGenPRAMEF18
Cancer3DPRAMEF18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF18
Genetic Testing Registry PRAMEF18
NextProtQ5VWM3 [Medical]
TSGene391003
GENETestsPRAMEF18
Target ValidationPRAMEF18
Huge Navigator PRAMEF18 [HugePedia]
snp3D : Map Gene to Disease391003
BioCentury BCIQPRAMEF18
ClinGenPRAMEF18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391003
Chemical/Pharm GKB GenePA145148195
Clinical trialPRAMEF18
Miscellaneous
canSAR (ICR)PRAMEF18 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF18
EVEXPRAMEF18
GoPubMedPRAMEF18
iHOPPRAMEF18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:13 CEST 2017

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