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PRAMEF19 (PRAME family member 19)

Identity

Alias_symbol (synonym)OTTHUMG00000007919
Other aliasPRAMEF18
HGNC (Hugo) PRAMEF19
LocusID (NCBI) 645414
Atlas_Id 56238
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13368431 and ends at 13371947 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF19   24908
Cards
Entrez_Gene (NCBI)PRAMEF19  645414  PRAME family member 19
AliasesPRAMEF18
GeneCards (Weizmann)PRAMEF19
Ensembl hg19 (Hinxton)ENSG00000204480 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204480 [Gene_View]  chr1:13368431-13371947 [Contig_View]  PRAMEF19 [Vega]
ICGC DataPortalENSG00000204480
TCGA cBioPortalPRAMEF19
AceView (NCBI)PRAMEF19
Genatlas (Paris)PRAMEF19
WikiGenes645414
SOURCE (Princeton)PRAMEF19
Genetics Home Reference (NIH)PRAMEF19
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF19  -     chr1:13368431-13371947 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF19  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF19 - 1p36.21 [CytoView hg19]  PRAMEF19 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF19 [Mapview hg19]  PRAMEF19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001099790
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF19
Alternative Splicing GalleryENSG00000204480
Gene ExpressionPRAMEF19 [ NCBI-GEO ]   PRAMEF19 [ EBI - ARRAY_EXPRESS ]   PRAMEF19 [ SEEK ]   PRAMEF19 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645414
GTEX Portal (Tissue expression)PRAMEF19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SWL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SWL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SWL8
Splice isoforms : SwissVarQ5SWL8
PhosPhoSitePlusQ5SWL8
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF19
DMDM Disease mutations645414
Blocks (Seattle)PRAMEF19
SuperfamilyQ5SWL8
Human Protein AtlasENSG00000204480
Peptide AtlasQ5SWL8
IPIIPI00383150   
Protein Interaction databases
DIP (DOE-UCLA)Q5SWL8
IntAct (EBI)Q5SWL8
FunCoupENSG00000204480
BioGRIDPRAMEF19
STRING (EMBL)PRAMEF19
ZODIACPRAMEF19
Ontologies - Pathways
QuickGOQ5SWL8
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF19
Atlas of Cancer Signalling NetworkPRAMEF19
Wikipedia pathwaysPRAMEF19
Orthology - Evolution
OrthoDB645414
GeneTree (enSembl)ENSG00000204480
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF19
HOVERGENQ5SWL8
HOGENOMQ5SWL8
Homologs : HomoloGenePRAMEF19
Homology/Alignments : Family Browser (UCSC)PRAMEF19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF19
dbVarPRAMEF19
ClinVarPRAMEF19
1000_GenomesPRAMEF19 
Exome Variant ServerPRAMEF19
ExAC (Exome Aggregation Consortium)PRAMEF19 (select the gene name)
Genetic variants : HAPMAP645414
Genomic Variants (DGV)PRAMEF19 [DGVbeta]
DECIPHERPRAMEF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF19 
Mutations
ICGC Data PortalPRAMEF19 
TCGA Data PortalPRAMEF19 
Broad Tumor PortalPRAMEF19
OASIS PortalPRAMEF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF19
DgiDB (Drug Gene Interaction Database)PRAMEF19
DoCM (Curated mutations)PRAMEF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF19 (select a term)
intoGenPRAMEF19
Cancer3DPRAMEF19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF19
Genetic Testing Registry PRAMEF19
NextProtQ5SWL8 [Medical]
TSGene645414
GENETestsPRAMEF19
Huge Navigator PRAMEF19 [HugePedia]
snp3D : Map Gene to Disease645414
BioCentury BCIQPRAMEF19
ClinGenPRAMEF19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645414
Chemical/Pharm GKB GenePA145148196
Clinical trialPRAMEF19
Miscellaneous
canSAR (ICR)PRAMEF19 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF19
EVEXPRAMEF19
GoPubMedPRAMEF19
iHOPPRAMEF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:32:35 CEST 2017

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