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PRAMEF2 (PRAME family member 2)

Identity

Alias_symbol (synonym)FLJ43580
Other aliasDJ845O24.3
HGNC (Hugo) PRAMEF2
LocusID (NCBI) 65122
Atlas_Id 41184
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12916941 and ends at 12921764 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF2   28841
Cards
Entrez_Gene (NCBI)PRAMEF2  65122  PRAME family member 2
AliasesDJ845O24.3
GeneCards (Weizmann)PRAMEF2
Ensembl hg19 (Hinxton)ENSG00000120952 [Gene_View]  chr1:12916941-12921764 [Contig_View]  PRAMEF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000120952 [Gene_View]  chr1:12916941-12921764 [Contig_View]  PRAMEF2 [Vega]
ICGC DataPortalENSG00000120952
TCGA cBioPortalPRAMEF2
AceView (NCBI)PRAMEF2
Genatlas (Paris)PRAMEF2
WikiGenes65122
SOURCE (Princeton)PRAMEF2
Genetics Home Reference (NIH)PRAMEF2
Genomic and cartography
GoldenPath hg19 (UCSC)PRAMEF2  -     chr1:12916941-12921764 +  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRAMEF2  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblPRAMEF2 - 1p36.21 [CytoView hg19]  PRAMEF2 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF2 [Mapview hg19]  PRAMEF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL049674 BC075008 BC075009 DQ786308
RefSeq transcript (Entrez)NM_023014
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)PRAMEF2
Cluster EST : UnigeneHs.104991 [ NCBI ]
CGAP (NCI)Hs.104991
Alternative Splicing GalleryENSG00000120952
Gene ExpressionPRAMEF2 [ NCBI-GEO ]   PRAMEF2 [ EBI - ARRAY_EXPRESS ]   PRAMEF2 [ SEEK ]   PRAMEF2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65122
GTEX Portal (Tissue expression)PRAMEF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60811   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60811  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60811
Splice isoforms : SwissVarO60811
PhosPhoSitePlusO60811
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF2
DMDM Disease mutations65122
Blocks (Seattle)PRAMEF2
SuperfamilyO60811
Human Protein AtlasENSG00000120952
Peptide AtlasO60811
HPRD11273
IPIIPI00032226   
Protein Interaction databases
DIP (DOE-UCLA)O60811
IntAct (EBI)O60811
FunCoupENSG00000120952
BioGRIDPRAMEF2
STRING (EMBL)PRAMEF2
ZODIACPRAMEF2
Ontologies - Pathways
QuickGOO60811
Ontology : AmiGOpositive regulation of cell proliferation  retinoic acid receptor binding  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  negative regulation of retinoic acid receptor signaling pathway  
Ontology : EGO-EBIpositive regulation of cell proliferation  retinoic acid receptor binding  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  negative regulation of retinoic acid receptor signaling pathway  
NDEx NetworkPRAMEF2
Atlas of Cancer Signalling NetworkPRAMEF2
Wikipedia pathwaysPRAMEF2
Orthology - Evolution
OrthoDB65122
GeneTree (enSembl)ENSG00000120952
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF2
HOVERGENO60811
HOGENOMO60811
Homologs : HomoloGenePRAMEF2
Homology/Alignments : Family Browser (UCSC)PRAMEF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF2
dbVarPRAMEF2
ClinVarPRAMEF2
1000_GenomesPRAMEF2 
Exome Variant ServerPRAMEF2
ExAC (Exome Aggregation Consortium)PRAMEF2 (select the gene name)
Genetic variants : HAPMAP65122
Genomic Variants (DGV)PRAMEF2 [DGVbeta]
DECIPHER (Syndromes)1:12916941-12921764  ENSG00000120952
CONAN: Copy Number AnalysisPRAMEF2 
Mutations
ICGC Data PortalPRAMEF2 
TCGA Data PortalPRAMEF2 
Broad Tumor PortalPRAMEF2
OASIS PortalPRAMEF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF2
DgiDB (Drug Gene Interaction Database)PRAMEF2
DoCM (Curated mutations)PRAMEF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF2 (select a term)
intoGenPRAMEF2
Cancer3DPRAMEF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF2
Genetic Testing Registry PRAMEF2
NextProtO60811 [Medical]
TSGene65122
GENETestsPRAMEF2
Huge Navigator PRAMEF2 [HugePedia]
snp3D : Map Gene to Disease65122
BioCentury BCIQPRAMEF2
ClinGenPRAMEF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65122
Chemical/Pharm GKB GenePA142671139
Clinical trialPRAMEF2
Miscellaneous
canSAR (ICR)PRAMEF2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF2
EVEXPRAMEF2
GoPubMedPRAMEF2
iHOPPRAMEF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:29 CEST 2017

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