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PRAMEF20 (PRAME family member 20)

Identity

Alias_namesPRAMEF21
PRAME family member 21
Alias_symbol (synonym)OTTHUMG00000007911
OTTHUMT00000008157
Other alias
HGNC (Hugo) PRAMEF20
LocusID (NCBI) 645425
Atlas_Id 56146
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13410450 and ends at 13421328 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF20   25224
Cards
Entrez_Gene (NCBI)PRAMEF20  645425  PRAME family member 20
AliasesPRAMEF21
GeneCards (Weizmann)PRAMEF20
Ensembl hg19 (Hinxton)ENSG00000204478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204478 [Gene_View]  chr1:13410450-13421328 [Contig_View]  PRAMEF20 [Vega]
ICGC DataPortalENSG00000204478
TCGA cBioPortalPRAMEF20
AceView (NCBI)PRAMEF20
Genatlas (Paris)PRAMEF20
WikiGenes645425
SOURCE (Princeton)PRAMEF20
Genetics Home Reference (NIH)PRAMEF20
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF20  -     chr1:13410450-13421328 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF20  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF20 - 1p36.21 [CytoView hg19]  PRAMEF20 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF20 [Mapview hg19]  PRAMEF20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001099852
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF20
Alternative Splicing GalleryENSG00000204478
Gene ExpressionPRAMEF20 [ NCBI-GEO ]   PRAMEF20 [ EBI - ARRAY_EXPRESS ]   PRAMEF20 [ SEEK ]   PRAMEF20 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645425
GTEX Portal (Tissue expression)PRAMEF20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VT98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VT98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VT98
Splice isoforms : SwissVarQ5VT98
PhosPhoSitePlusQ5VT98
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF20
DMDM Disease mutations645425
Blocks (Seattle)PRAMEF20
SuperfamilyQ5VT98
Human Protein AtlasENSG00000204478
Peptide AtlasQ5VT98
Protein Interaction databases
DIP (DOE-UCLA)Q5VT98
IntAct (EBI)Q5VT98
FunCoupENSG00000204478
BioGRIDPRAMEF20
STRING (EMBL)PRAMEF20
ZODIACPRAMEF20
Ontologies - Pathways
QuickGOQ5VT98
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF20
Atlas of Cancer Signalling NetworkPRAMEF20
Wikipedia pathwaysPRAMEF20
Orthology - Evolution
OrthoDB645425
GeneTree (enSembl)ENSG00000204478
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF20
HOVERGENQ5VT98
HOGENOMQ5VT98
Homologs : HomoloGenePRAMEF20
Homology/Alignments : Family Browser (UCSC)PRAMEF20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF20
dbVarPRAMEF20
ClinVarPRAMEF20
1000_GenomesPRAMEF20 
Exome Variant ServerPRAMEF20
ExAC (Exome Aggregation Consortium)PRAMEF20 (select the gene name)
Genetic variants : HAPMAP645425
Genomic Variants (DGV)PRAMEF20 [DGVbeta]
DECIPHERPRAMEF20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF20 
Mutations
ICGC Data PortalPRAMEF20 
TCGA Data PortalPRAMEF20 
Broad Tumor PortalPRAMEF20
OASIS PortalPRAMEF20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF20
DgiDB (Drug Gene Interaction Database)PRAMEF20
DoCM (Curated mutations)PRAMEF20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF20 (select a term)
intoGenPRAMEF20
Cancer3DPRAMEF20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF20
Genetic Testing Registry PRAMEF20
NextProtQ5VT98 [Medical]
TSGene645425
GENETestsPRAMEF20
Target ValidationPRAMEF20
Huge Navigator PRAMEF20 [HugePedia]
snp3D : Map Gene to Disease645425
BioCentury BCIQPRAMEF20
ClinGenPRAMEF20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645425
Chemical/Pharm GKB GenePA145148198
Clinical trialPRAMEF20
Miscellaneous
canSAR (ICR)PRAMEF20 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF20
EVEXPRAMEF20
GoPubMedPRAMEF20
iHOPPRAMEF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:11:32 CEST 2017

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