Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRAMEF22 (PRAME family member 22)

Identity

Alias_symbol (synonym)PRAMEF3L
Other alias
HGNC (Hugo) PRAMEF22
LocusID (NCBI) 653606
Atlas_Id 56242
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13223332 and ends at 13226109 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF22   34393
Cards
Entrez_Gene (NCBI)PRAMEF22  653606  PRAME family member 22
AliasesPRAMEF3L
GeneCards (Weizmann)PRAMEF22
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:13223332-13226109 [Contig_View]  PRAMEF22 [Vega]
TCGA cBioPortalPRAMEF22
AceView (NCBI)PRAMEF22
Genatlas (Paris)PRAMEF22
WikiGenes653606
SOURCE (Princeton)PRAMEF22
Genetics Home Reference (NIH)PRAMEF22
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF22  -     chr1:13223332-13226109 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF22  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF22 - 1p36.21 [CytoView hg19]  PRAMEF22 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF22 [Mapview hg19]  PRAMEF22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001100631
RefSeq genomic (Entrez)NC_018912 NT_187517 NW_012132914
Consensus coding sequences : CCDS (NCBI)PRAMEF22
Cluster EST : UnigeneHs.712522 [ NCBI ]
CGAP (NCI)Hs.712522
Gene ExpressionPRAMEF22 [ NCBI-GEO ]   PRAMEF22 [ EBI - ARRAY_EXPRESS ]   PRAMEF22 [ SEEK ]   PRAMEF22 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653606
GTEX Portal (Tissue expression)PRAMEF22
Protein : pattern, domain, 3D structure
UniProt/SwissProtA3QJZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA3QJZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA3QJZ6
Splice isoforms : SwissVarA3QJZ6
PhosPhoSitePlusA3QJZ6
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF22
DMDM Disease mutations653606
Blocks (Seattle)PRAMEF22
SuperfamilyA3QJZ6
Peptide AtlasA3QJZ6
IPIIPI00855983   
Protein Interaction databases
DIP (DOE-UCLA)A3QJZ6
IntAct (EBI)A3QJZ6
BioGRIDPRAMEF22
STRING (EMBL)PRAMEF22
ZODIACPRAMEF22
Ontologies - Pathways
QuickGOA3QJZ6
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF22
Atlas of Cancer Signalling NetworkPRAMEF22
Wikipedia pathwaysPRAMEF22
Orthology - Evolution
OrthoDB653606
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF22
HOVERGENA3QJZ6
HOGENOMA3QJZ6
Homologs : HomoloGenePRAMEF22
Homology/Alignments : Family Browser (UCSC)PRAMEF22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF22
dbVarPRAMEF22
ClinVarPRAMEF22
1000_GenomesPRAMEF22 
Exome Variant ServerPRAMEF22
ExAC (Exome Aggregation Consortium)PRAMEF22 (select the gene name)
Genetic variants : HAPMAP653606
Genomic Variants (DGV)PRAMEF22 [DGVbeta]
DECIPHERPRAMEF22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF22 
Mutations
ICGC Data PortalPRAMEF22 
TCGA Data PortalPRAMEF22 
Broad Tumor PortalPRAMEF22
OASIS PortalPRAMEF22 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF22
DgiDB (Drug Gene Interaction Database)PRAMEF22
DoCM (Curated mutations)PRAMEF22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF22 (select a term)
intoGenPRAMEF22
Cancer3DPRAMEF22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF22
Genetic Testing Registry PRAMEF22
NextProtA3QJZ6 [Medical]
TSGene653606
GENETestsPRAMEF22
Target ValidationPRAMEF22
Huge Navigator PRAMEF22 [HugePedia]
snp3D : Map Gene to Disease653606
BioCentury BCIQPRAMEF22
ClinGenPRAMEF22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653606
Chemical/Pharm GKB GenePA162400009
Clinical trialPRAMEF22
Miscellaneous
canSAR (ICR)PRAMEF22 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF22
EVEXPRAMEF22
GoPubMedPRAMEF22
iHOPPRAMEF22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:26:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.