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PRAMEF25 (PRAME family member 25)

Identity

Other alias-
HGNC (Hugo) PRAMEF25
LocusID (NCBI) 441873
Atlas_Id 56082
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13052240 and ends at 13112702 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PRAMEF25   49179
Cards
Entrez_Gene (NCBI)PRAMEF25  441873  PRAME family member 25
Aliases
GeneCards (Weizmann)PRAMEF25
Ensembl hg19 (Hinxton)ENSG00000229571 [Gene_View]  chr1:13052240-13112702 [Contig_View]  PRAMEF25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000229571 [Gene_View]  chr1:13052240-13112702 [Contig_View]  PRAMEF25 [Vega]
ICGC DataPortalENSG00000229571
TCGA cBioPortalPRAMEF25
AceView (NCBI)PRAMEF25
Genatlas (Paris)PRAMEF25
WikiGenes441873
SOURCE (Princeton)PRAMEF25
Genetics Home Reference (NIH)PRAMEF25
Genomic and cartography
GoldenPath hg19 (UCSC)PRAMEF25  -     chr1:13052240-13112702 -  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRAMEF25  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblPRAMEF25 - 1p36.21 [CytoView hg19]  PRAMEF25 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF25 [Mapview hg19]  PRAMEF25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001310134
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF25
Alternative Splicing GalleryENSG00000229571
Gene ExpressionPRAMEF25 [ NCBI-GEO ]   PRAMEF25 [ EBI - ARRAY_EXPRESS ]   PRAMEF25 [ SEEK ]   PRAMEF25 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441873
GTEX Portal (Tissue expression)PRAMEF25
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGN4
Splice isoforms : SwissVarA6NGN4
PhosPhoSitePlusA6NGN4
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF25
DMDM Disease mutations441873
Blocks (Seattle)PRAMEF25
SuperfamilyA6NGN4
Human Protein AtlasENSG00000229571
Peptide AtlasA6NGN4
IPIIPI00984400   
Protein Interaction databases
DIP (DOE-UCLA)A6NGN4
IntAct (EBI)A6NGN4
FunCoupENSG00000229571
BioGRIDPRAMEF25
STRING (EMBL)PRAMEF25
ZODIACPRAMEF25
Ontologies - Pathways
QuickGOA6NGN4
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF25
Atlas of Cancer Signalling NetworkPRAMEF25
Wikipedia pathwaysPRAMEF25
Orthology - Evolution
OrthoDB441873
GeneTree (enSembl)ENSG00000229571
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF25
HOVERGENA6NGN4
HOGENOMA6NGN4
Homologs : HomoloGenePRAMEF25
Homology/Alignments : Family Browser (UCSC)PRAMEF25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF25
dbVarPRAMEF25
ClinVarPRAMEF25
1000_GenomesPRAMEF25 
Exome Variant ServerPRAMEF25
ExAC (Exome Aggregation Consortium)PRAMEF25 (select the gene name)
Genetic variants : HAPMAP441873
Genomic Variants (DGV)PRAMEF25 [DGVbeta]
DECIPHER (Syndromes)1:13052240-13112702  ENSG00000229571
CONAN: Copy Number AnalysisPRAMEF25 
Mutations
ICGC Data PortalPRAMEF25 
TCGA Data PortalPRAMEF25 
Broad Tumor PortalPRAMEF25
OASIS PortalPRAMEF25 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF25
BioMutasearch PRAMEF25
DgiDB (Drug Gene Interaction Database)PRAMEF25
DoCM (Curated mutations)PRAMEF25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF25 (select a term)
intoGenPRAMEF25
Cancer3DPRAMEF25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF25
Genetic Testing Registry PRAMEF25
NextProtA6NGN4 [Medical]
TSGene441873
GENETestsPRAMEF25
Huge Navigator PRAMEF25 [HugePedia]
snp3D : Map Gene to Disease441873
BioCentury BCIQPRAMEF25
ClinGenPRAMEF25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441873
Clinical trialPRAMEF25
Miscellaneous
canSAR (ICR)PRAMEF25 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF25
EVEXPRAMEF25
GoPubMedPRAMEF25
iHOPPRAMEF25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:22:45 CET 2017

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