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PRAMEF26 (PRAME family member 26)

Identity

Other alias-
HGNC (Hugo) PRAMEF26
LocusID (NCBI) 645359
Atlas_Id 77508
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13073678 and ends at 13077884 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF26   49178
Cards
Entrez_Gene (NCBI)PRAMEF26  645359  PRAME family member 26
Aliases
GeneCards (Weizmann)PRAMEF26
Ensembl hg19 (Hinxton)ENSG00000280267 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280267 [Gene_View]  chr1:13073678-13077884 [Contig_View]  PRAMEF26 [Vega]
ICGC DataPortalENSG00000280267
TCGA cBioPortalPRAMEF26
AceView (NCBI)PRAMEF26
Genatlas (Paris)PRAMEF26
WikiGenes645359
SOURCE (Princeton)PRAMEF26
Genetics Home Reference (NIH)PRAMEF26
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF26  -     chr1:13073678-13077884 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF26  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF26 - 1p36.21 [CytoView hg19]  PRAMEF26 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF26 [Mapview hg19]  PRAMEF26 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001306072
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187517 NW_012132914 NW_015495298
Consensus coding sequences : CCDS (NCBI)PRAMEF26
Alternative Splicing GalleryENSG00000280267
Gene ExpressionPRAMEF26 [ NCBI-GEO ]   PRAMEF26 [ EBI - ARRAY_EXPRESS ]   PRAMEF26 [ SEEK ]   PRAMEF26 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645359
GTEX Portal (Tissue expression)PRAMEF26
Protein : pattern, domain, 3D structure
UniProt/SwissProtH0Y7S4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH0Y7S4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH0Y7S4
Splice isoforms : SwissVarH0Y7S4
PhosPhoSitePlusH0Y7S4
Domains : Interpro (EBI)L_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF26
DMDM Disease mutations645359
Blocks (Seattle)PRAMEF26
SuperfamilyH0Y7S4
Human Protein AtlasENSG00000280267
Peptide AtlasH0Y7S4
IPIIPI00658091   
Protein Interaction databases
DIP (DOE-UCLA)H0Y7S4
IntAct (EBI)H0Y7S4
FunCoupENSG00000280267
BioGRIDPRAMEF26
STRING (EMBL)PRAMEF26
ZODIACPRAMEF26
Ontologies - Pathways
QuickGOH0Y7S4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRAMEF26
Atlas of Cancer Signalling NetworkPRAMEF26
Wikipedia pathwaysPRAMEF26
Orthology - Evolution
OrthoDB645359
GeneTree (enSembl)ENSG00000280267
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF26
HOVERGENH0Y7S4
HOGENOMH0Y7S4
Homologs : HomoloGenePRAMEF26
Homology/Alignments : Family Browser (UCSC)PRAMEF26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF26
dbVarPRAMEF26
ClinVarPRAMEF26
1000_GenomesPRAMEF26 
Exome Variant ServerPRAMEF26
ExAC (Exome Aggregation Consortium)PRAMEF26 (select the gene name)
Genetic variants : HAPMAP645359
Genomic Variants (DGV)PRAMEF26 [DGVbeta]
DECIPHERPRAMEF26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF26 
Mutations
ICGC Data PortalPRAMEF26 
TCGA Data PortalPRAMEF26 
Broad Tumor PortalPRAMEF26
OASIS PortalPRAMEF26 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF26
BioMutasearch PRAMEF26
DgiDB (Drug Gene Interaction Database)PRAMEF26
DoCM (Curated mutations)PRAMEF26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF26 (select a term)
intoGenPRAMEF26
Cancer3DPRAMEF26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF26
Genetic Testing Registry PRAMEF26
NextProtH0Y7S4 [Medical]
TSGene645359
GENETestsPRAMEF26
Target ValidationPRAMEF26
Huge Navigator PRAMEF26 [HugePedia]
snp3D : Map Gene to Disease645359
BioCentury BCIQPRAMEF26
ClinGenPRAMEF26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645359
Chemical/Pharm GKB GenePA166123727
Clinical trialPRAMEF26
Miscellaneous
canSAR (ICR)PRAMEF26 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF26
EVEXPRAMEF26
GoPubMedPRAMEF26
iHOPPRAMEF26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:37:14 CEST 2017

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