Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRAMEF27 (PRAME family member 27)

Identity

Other alias-
HGNC (Hugo) PRAMEF27
LocusID (NCBI) 101929983
Atlas_Id 56416
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13049808 and ends at 13053659 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF27   51234
Cards
Entrez_Gene (NCBI)PRAMEF27  101929983  PRAME family member 27
Aliases
GeneCards (Weizmann)PRAMEF27
Ensembl hg19 (Hinxton)ENSG00000274764 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274764 [Gene_View]  chr1:13049808-13053659 [Contig_View]  PRAMEF27 [Vega]
ICGC DataPortalENSG00000274764
TCGA cBioPortalPRAMEF27
AceView (NCBI)PRAMEF27
Genatlas (Paris)PRAMEF27
WikiGenes101929983
SOURCE (Princeton)PRAMEF27
Genetics Home Reference (NIH)PRAMEF27
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF27  -     chr1:13049808-13053659 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF27  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF27 - 1p36.21 [CytoView hg19]  PRAMEF27 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF27 [Mapview hg19]  PRAMEF27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001300891
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF27
Alternative Splicing GalleryENSG00000274764
Gene ExpressionPRAMEF27 [ NCBI-GEO ]   PRAMEF27 [ EBI - ARRAY_EXPRESS ]   PRAMEF27 [ SEEK ]   PRAMEF27 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929983
GTEX Portal (Tissue expression)PRAMEF27
Protein : pattern, domain, 3D structure
UniProt/SwissProtA3QJZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA3QJZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA3QJZ7
Splice isoforms : SwissVarA3QJZ7
PhosPhoSitePlusA3QJZ7
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF27
DMDM Disease mutations101929983
Blocks (Seattle)PRAMEF27
SuperfamilyA3QJZ7
Human Protein AtlasENSG00000274764
Peptide AtlasA3QJZ7
Protein Interaction databases
DIP (DOE-UCLA)A3QJZ7
IntAct (EBI)A3QJZ7
FunCoupENSG00000274764
BioGRIDPRAMEF27
STRING (EMBL)PRAMEF27
ZODIACPRAMEF27
Ontologies - Pathways
QuickGOA3QJZ7
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF27
Atlas of Cancer Signalling NetworkPRAMEF27
Wikipedia pathwaysPRAMEF27
Orthology - Evolution
OrthoDB101929983
GeneTree (enSembl)ENSG00000274764
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF27
HOVERGENA3QJZ7
HOGENOMA3QJZ7
Homologs : HomoloGenePRAMEF27
Homology/Alignments : Family Browser (UCSC)PRAMEF27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF27
dbVarPRAMEF27
ClinVarPRAMEF27
1000_GenomesPRAMEF27 
Exome Variant ServerPRAMEF27
ExAC (Exome Aggregation Consortium)PRAMEF27 (select the gene name)
Genetic variants : HAPMAP101929983
Genomic Variants (DGV)PRAMEF27 [DGVbeta]
DECIPHERPRAMEF27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF27 
Mutations
ICGC Data PortalPRAMEF27 
TCGA Data PortalPRAMEF27 
Broad Tumor PortalPRAMEF27
OASIS PortalPRAMEF27 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF27
BioMutasearch PRAMEF27
DgiDB (Drug Gene Interaction Database)PRAMEF27
DoCM (Curated mutations)PRAMEF27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF27 (select a term)
intoGenPRAMEF27
Cancer3DPRAMEF27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF27
Genetic Testing Registry PRAMEF27
NextProtA3QJZ7 [Medical]
TSGene101929983
GENETestsPRAMEF27
Target ValidationPRAMEF27
Huge Navigator PRAMEF27 [HugePedia]
snp3D : Map Gene to Disease101929983
BioCentury BCIQPRAMEF27
ClinGenPRAMEF27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929983
Clinical trialPRAMEF27
Miscellaneous
canSAR (ICR)PRAMEF27 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF27
EVEXPRAMEF27
GoPubMedPRAMEF27
iHOPPRAMEF27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:50:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.