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PRAMEF4 (PRAME family member 4)

Identity

Alias_symbol (synonym)RP5-845O24.6
Other alias-
HGNC (Hugo) PRAMEF4
LocusID (NCBI) 400735
Atlas_Id 56237
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12879212 and ends at 12886201 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF4   31971
Cards
Entrez_Gene (NCBI)PRAMEF4  400735  PRAME family member 4
Aliases
GeneCards (Weizmann)PRAMEF4
Ensembl hg19 (Hinxton)ENSG00000243073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243073 [Gene_View]  chr1:12879212-12886201 [Contig_View]  PRAMEF4 [Vega]
ICGC DataPortalENSG00000243073
TCGA cBioPortalPRAMEF4
AceView (NCBI)PRAMEF4
Genatlas (Paris)PRAMEF4
WikiGenes400735
SOURCE (Princeton)PRAMEF4
Genetics Home Reference (NIH)PRAMEF4
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF4  -     chr1:12879212-12886201 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF4  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF4 - 1p36.21 [CytoView hg19]  PRAMEF4 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF4 [Mapview hg19]  PRAMEF4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL049681
RefSeq transcript (Entrez)NM_001009611
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF4
Cluster EST : UnigeneHs.551617 [ NCBI ]
CGAP (NCI)Hs.551617
Alternative Splicing GalleryENSG00000243073
Gene ExpressionPRAMEF4 [ NCBI-GEO ]   PRAMEF4 [ EBI - ARRAY_EXPRESS ]   PRAMEF4 [ SEEK ]   PRAMEF4 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400735
GTEX Portal (Tissue expression)PRAMEF4
Human Protein AtlasENSG00000243073-PRAMEF4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60810   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60810  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60810
Splice isoforms : SwissVarO60810
PhosPhoSitePlusO60810
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF4
DMDM Disease mutations400735
Blocks (Seattle)PRAMEF4
SuperfamilyO60810
Human Protein Atlas [tissue]ENSG00000243073-PRAMEF4 [tissue]
Peptide AtlasO60810
HPRD17992
IPIIPI00032223   
Protein Interaction databases
DIP (DOE-UCLA)O60810
IntAct (EBI)O60810
FunCoupENSG00000243073
BioGRIDPRAMEF4
STRING (EMBL)PRAMEF4
ZODIACPRAMEF4
Ontologies - Pathways
QuickGOO60810
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF4
Atlas of Cancer Signalling NetworkPRAMEF4
Wikipedia pathwaysPRAMEF4
Orthology - Evolution
OrthoDB400735
GeneTree (enSembl)ENSG00000243073
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF4
HOVERGENO60810
HOGENOMO60810
Homologs : HomoloGenePRAMEF4
Homology/Alignments : Family Browser (UCSC)PRAMEF4
Gene fusions - Rearrangements
Tumor Fusion PortalPRAMEF4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF4
dbVarPRAMEF4
ClinVarPRAMEF4
1000_GenomesPRAMEF4 
Exome Variant ServerPRAMEF4
ExAC (Exome Aggregation Consortium)ENSG00000243073
GNOMAD BrowserENSG00000243073
Genetic variants : HAPMAP400735
Genomic Variants (DGV)PRAMEF4 [DGVbeta]
DECIPHERPRAMEF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF4 
Mutations
ICGC Data PortalPRAMEF4 
TCGA Data PortalPRAMEF4 
Broad Tumor PortalPRAMEF4
OASIS PortalPRAMEF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF4
DgiDB (Drug Gene Interaction Database)PRAMEF4
DoCM (Curated mutations)PRAMEF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF4 (select a term)
intoGenPRAMEF4
Cancer3DPRAMEF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRAMEF4
MedgenPRAMEF4
Genetic Testing Registry PRAMEF4
NextProtO60810 [Medical]
TSGene400735
GENETestsPRAMEF4
Target ValidationPRAMEF4
Huge Navigator PRAMEF4 [HugePedia]
snp3D : Map Gene to Disease400735
BioCentury BCIQPRAMEF4
ClinGenPRAMEF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400735
Chemical/Pharm GKB GenePA142671141
Clinical trialPRAMEF4
Miscellaneous
canSAR (ICR)PRAMEF4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF4
EVEXPRAMEF4
GoPubMedPRAMEF4
iHOPPRAMEF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:53:43 CET 2017

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