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PRAMEF5 (PRAME family member 5)

Identity

Alias_namesPRAMEF23
PRAME family member 23
Alias_symbol (synonym)PRAMEF5L
Other alias
HGNC (Hugo) PRAMEF5
LocusID (NCBI) 343068
Atlas_Id 56543
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13254198 and ends at 13263435 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF5   27995
Cards
Entrez_Gene (NCBI)PRAMEF5  343068  PRAME family member 5
AliasesPRAMEF23; PRAMEF5L
GeneCards (Weizmann)PRAMEF5
Ensembl hg19 (Hinxton)ENSG00000270601 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270601 [Gene_View]  chr1:13254198-13263435 [Contig_View]  PRAMEF5 [Vega]
ICGC DataPortalENSG00000270601
TCGA cBioPortalPRAMEF5
AceView (NCBI)PRAMEF5
Genatlas (Paris)PRAMEF5
WikiGenes343068
SOURCE (Princeton)PRAMEF5
Genetics Home Reference (NIH)PRAMEF5
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF5  -     chr1:13254198-13263435 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF5  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF5 - 1p36.21 [CytoView hg19]  PRAMEF5 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF5 [Mapview hg19]  PRAMEF5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC101344 BC130274 BC130276 HQ258277
RefSeq transcript (Entrez)NM_001013407
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187517 NW_012132914 NW_015495298
Consensus coding sequences : CCDS (NCBI)PRAMEF5
Cluster EST : UnigeneHs.567864 [ NCBI ]
CGAP (NCI)Hs.567864
Alternative Splicing GalleryENSG00000270601
Gene ExpressionPRAMEF5 [ NCBI-GEO ]   PRAMEF5 [ EBI - ARRAY_EXPRESS ]   PRAMEF5 [ SEEK ]   PRAMEF5 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343068
GTEX Portal (Tissue expression)PRAMEF5
Human Protein AtlasENSG00000270601-PRAMEF5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TYX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TYX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TYX0
Splice isoforms : SwissVarQ5TYX0
PhosPhoSitePlusQ5TYX0
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF5
DMDM Disease mutations343068
Blocks (Seattle)PRAMEF5
SuperfamilyQ5TYX0
Human Protein Atlas [tissue]ENSG00000270601-PRAMEF5 [tissue]
Peptide AtlasQ5TYX0
IPIIPI00455416   
Protein Interaction databases
DIP (DOE-UCLA)Q5TYX0
IntAct (EBI)Q5TYX0
FunCoupENSG00000270601
BioGRIDPRAMEF5
STRING (EMBL)PRAMEF5
ZODIACPRAMEF5
Ontologies - Pathways
QuickGOQ5TYX0
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF5
Atlas of Cancer Signalling NetworkPRAMEF5
Wikipedia pathwaysPRAMEF5
Orthology - Evolution
OrthoDB343068
GeneTree (enSembl)ENSG00000270601
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF5
HOVERGENQ5TYX0
HOGENOMQ5TYX0
Homologs : HomoloGenePRAMEF5
Homology/Alignments : Family Browser (UCSC)PRAMEF5
Gene fusions - Rearrangements
Tumor Fusion PortalPRAMEF5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF5
dbVarPRAMEF5
ClinVarPRAMEF5
1000_GenomesPRAMEF5 
Exome Variant ServerPRAMEF5
ExAC (Exome Aggregation Consortium)ENSG00000270601
GNOMAD BrowserENSG00000270601
Genetic variants : HAPMAP343068
Genomic Variants (DGV)PRAMEF5 [DGVbeta]
DECIPHERPRAMEF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF5 
Mutations
ICGC Data PortalPRAMEF5 
TCGA Data PortalPRAMEF5 
Broad Tumor PortalPRAMEF5
OASIS PortalPRAMEF5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRAMEF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF5
DgiDB (Drug Gene Interaction Database)PRAMEF5
DoCM (Curated mutations)PRAMEF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF5 (select a term)
intoGenPRAMEF5
Cancer3DPRAMEF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRAMEF5
MedgenPRAMEF5
Genetic Testing Registry PRAMEF5
NextProtQ5TYX0 [Medical]
TSGene343068
GENETestsPRAMEF5
Target ValidationPRAMEF5
Huge Navigator PRAMEF5 [HugePedia]
snp3D : Map Gene to Disease343068
BioCentury BCIQPRAMEF5
ClinGenPRAMEF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343068
Chemical/Pharm GKB GenePA142671142
Clinical trialPRAMEF5
Miscellaneous
canSAR (ICR)PRAMEF5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF5
EVEXPRAMEF5
GoPubMedPRAMEF5
iHOPPRAMEF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:30:09 CET 2017

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