Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRAMEF6 (PRAME family member 6)

Identity

Other alias-
HGNC (Hugo) PRAMEF6
LocusID (NCBI) 440561
Atlas_Id 56320
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13359833 and ends at 13368936 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF6   30583
Cards
Entrez_Gene (NCBI)PRAMEF6  440561  PRAME family member 6
Aliases
GeneCards (Weizmann)PRAMEF6
Ensembl hg19 (Hinxton)ENSG00000232423 [Gene_View]  chr1:13359833-13368936 [Contig_View]  PRAMEF6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232423 [Gene_View]  chr1:13359833-13368936 [Contig_View]  PRAMEF6 [Vega]
ICGC DataPortalENSG00000232423
TCGA cBioPortalPRAMEF6
AceView (NCBI)PRAMEF6
Genatlas (Paris)PRAMEF6
WikiGenes440561
SOURCE (Princeton)PRAMEF6
Genetics Home Reference (NIH)PRAMEF6
Genomic and cartography
GoldenPath hg19 (UCSC)PRAMEF6  -     chr1:13359833-13368936 +  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRAMEF6  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblPRAMEF6 - 1p36.21 [CytoView hg19]  PRAMEF6 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF6 [Mapview hg19]  PRAMEF6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001010889
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAMEF6
Cluster EST : UnigeneHs.567864 [ NCBI ]
CGAP (NCI)Hs.567864
Alternative Splicing GalleryENSG00000232423
Gene ExpressionPRAMEF6 [ NCBI-GEO ]   PRAMEF6 [ EBI - ARRAY_EXPRESS ]   PRAMEF6 [ SEEK ]   PRAMEF6 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440561
GTEX Portal (Tissue expression)PRAMEF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VXH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VXH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VXH4
Splice isoforms : SwissVarQ5VXH4
PhosPhoSitePlusQ5VXH4
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF6
DMDM Disease mutations440561
Blocks (Seattle)PRAMEF6
SuperfamilyQ5VXH4
Human Protein AtlasENSG00000232423
Peptide AtlasQ5VXH4
HPRD17358
IPIIPI00554641   
Protein Interaction databases
DIP (DOE-UCLA)Q5VXH4
IntAct (EBI)Q5VXH4
FunCoupENSG00000232423
BioGRIDPRAMEF6
STRING (EMBL)PRAMEF6
ZODIACPRAMEF6
Ontologies - Pathways
QuickGOQ5VXH4
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF6
Atlas of Cancer Signalling NetworkPRAMEF6
Wikipedia pathwaysPRAMEF6
Orthology - Evolution
OrthoDB440561
GeneTree (enSembl)ENSG00000232423
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF6
HOVERGENQ5VXH4
HOGENOMQ5VXH4
Homologs : HomoloGenePRAMEF6
Homology/Alignments : Family Browser (UCSC)PRAMEF6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF6
dbVarPRAMEF6
ClinVarPRAMEF6
1000_GenomesPRAMEF6 
Exome Variant ServerPRAMEF6
ExAC (Exome Aggregation Consortium)PRAMEF6 (select the gene name)
Genetic variants : HAPMAP440561
Genomic Variants (DGV)PRAMEF6 [DGVbeta]
DECIPHER (Syndromes)1:13359833-13368936  ENSG00000232423
CONAN: Copy Number AnalysisPRAMEF6 
Mutations
ICGC Data PortalPRAMEF6 
TCGA Data PortalPRAMEF6 
Broad Tumor PortalPRAMEF6
OASIS PortalPRAMEF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF6
DgiDB (Drug Gene Interaction Database)PRAMEF6
DoCM (Curated mutations)PRAMEF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF6 (select a term)
intoGenPRAMEF6
Cancer3DPRAMEF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF6
Genetic Testing Registry PRAMEF6
NextProtQ5VXH4 [Medical]
TSGene440561
GENETestsPRAMEF6
Huge Navigator PRAMEF6 [HugePedia]
snp3D : Map Gene to Disease440561
BioCentury BCIQPRAMEF6
ClinGenPRAMEF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440561
Chemical/Pharm GKB GenePA142671143
Clinical trialPRAMEF6
Miscellaneous
canSAR (ICR)PRAMEF6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF6
EVEXPRAMEF6
GoPubMedPRAMEF6
iHOPPRAMEF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:15:31 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.