Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRAMEF8 (PRAME family member 8)

Identity

Other aliasPRAMEF24
HGNC (Hugo) PRAMEF8
LocusID (NCBI) 391002
Atlas_Id 56026
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12976467 and ends at 12980300 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF8   24074
Cards
Entrez_Gene (NCBI)PRAMEF8  391002  PRAME family member 8
AliasesPRAMEF24
GeneCards (Weizmann)PRAMEF8
Ensembl hg19 (Hinxton)ENSG00000182330 [Gene_View]  chr1:12976467-12980300 [Contig_View]  PRAMEF8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182330 [Gene_View]  chr1:12976467-12980300 [Contig_View]  PRAMEF8 [Vega]
ICGC DataPortalENSG00000182330
TCGA cBioPortalPRAMEF8
AceView (NCBI)PRAMEF8
Genatlas (Paris)PRAMEF8
WikiGenes391002
SOURCE (Princeton)PRAMEF8
Genetics Home Reference (NIH)PRAMEF8
Genomic and cartography
GoldenPath hg19 (UCSC)PRAMEF8  -     chr1:12976467-12980300 +  1p36.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRAMEF8  -     1p36.21   [Description]    (hg38-Dec_2013)
EnsemblPRAMEF8 - 1p36.21 [CytoView hg19]  PRAMEF8 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF8 [Mapview hg19]  PRAMEF8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001012276
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187517 NW_012132914 NW_015495298
Consensus coding sequences : CCDS (NCBI)PRAMEF8
Cluster EST : UnigeneHs.553832 [ NCBI ]
CGAP (NCI)Hs.553832
Alternative Splicing GalleryENSG00000182330
Gene ExpressionPRAMEF8 [ NCBI-GEO ]   PRAMEF8 [ EBI - ARRAY_EXPRESS ]   PRAMEF8 [ SEEK ]   PRAMEF8 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391002
GTEX Portal (Tissue expression)PRAMEF8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWM4
Splice isoforms : SwissVarQ5VWM4
PhosPhoSitePlusQ5VWM4
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF8
DMDM Disease mutations391002
Blocks (Seattle)PRAMEF8
SuperfamilyQ5VWM4
Human Protein AtlasENSG00000182330
Peptide AtlasQ5VWM4
HPRD17382
IPIIPI00478685   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWM4
IntAct (EBI)Q5VWM4
FunCoupENSG00000182330
BioGRIDPRAMEF8
STRING (EMBL)PRAMEF8
ZODIACPRAMEF8
Ontologies - Pathways
QuickGOQ5VWM4
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF8
Atlas of Cancer Signalling NetworkPRAMEF8
Wikipedia pathwaysPRAMEF8
Orthology - Evolution
OrthoDB391002
GeneTree (enSembl)ENSG00000182330
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF8
HOVERGENQ5VWM4
HOGENOMQ5VWM4
Homologs : HomoloGenePRAMEF8
Homology/Alignments : Family Browser (UCSC)PRAMEF8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF8
dbVarPRAMEF8
ClinVarPRAMEF8
1000_GenomesPRAMEF8 
Exome Variant ServerPRAMEF8
ExAC (Exome Aggregation Consortium)PRAMEF8 (select the gene name)
Genetic variants : HAPMAP391002
Genomic Variants (DGV)PRAMEF8 [DGVbeta]
DECIPHER (Syndromes)1:12976467-12980300  ENSG00000182330
CONAN: Copy Number AnalysisPRAMEF8 
Mutations
ICGC Data PortalPRAMEF8 
TCGA Data PortalPRAMEF8 
Broad Tumor PortalPRAMEF8
OASIS PortalPRAMEF8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF8
DgiDB (Drug Gene Interaction Database)PRAMEF8
DoCM (Curated mutations)PRAMEF8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF8 (select a term)
intoGenPRAMEF8
Cancer3DPRAMEF8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF8
Genetic Testing Registry PRAMEF8
NextProtQ5VWM4 [Medical]
TSGene391002
GENETestsPRAMEF8
Huge Navigator PRAMEF8 [HugePedia]
snp3D : Map Gene to Disease391002
BioCentury BCIQPRAMEF8
ClinGenPRAMEF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391002
Chemical/Pharm GKB GenePA142671145
Clinical trialPRAMEF8
Miscellaneous
canSAR (ICR)PRAMEF8 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF8
EVEXPRAMEF8
GoPubMedPRAMEF8
iHOPPRAMEF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:22:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.