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PRAMEF9 (PRAME family member 9)

Identity

Other alias-
HGNC (Hugo) PRAMEF9
LocusID (NCBI) 343070
Atlas_Id 56403
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13175281 and ends at 13179132 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAMEF9   27996
Cards
Entrez_Gene (NCBI)PRAMEF9  343070  PRAME family member 9
Aliases
GeneCards (Weizmann)PRAMEF9
Ensembl hg19 (Hinxton)ENSG00000204505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204505 [Gene_View]  chr1:13175281-13179132 [Contig_View]  PRAMEF9 [Vega]
ICGC DataPortalENSG00000204505
TCGA cBioPortalPRAMEF9
AceView (NCBI)PRAMEF9
Genatlas (Paris)PRAMEF9
WikiGenes343070
SOURCE (Princeton)PRAMEF9
Genetics Home Reference (NIH)PRAMEF9
Genomic and cartography
GoldenPath hg38 (UCSC)PRAMEF9  -     chr1:13175281-13179132 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAMEF9  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblPRAMEF9 - 1p36.21 [CytoView hg19]  PRAMEF9 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIPRAMEF9 [Mapview hg19]  PRAMEF9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124292 BC101343 BC137391 BC171794
RefSeq transcript (Entrez)NM_001010890
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187517 NW_012132914 NW_015495298
Consensus coding sequences : CCDS (NCBI)PRAMEF9
Cluster EST : UnigeneHs.631873 [ NCBI ]
CGAP (NCI)Hs.631873
Alternative Splicing GalleryENSG00000204505
Gene ExpressionPRAMEF9 [ NCBI-GEO ]   PRAMEF9 [ EBI - ARRAY_EXPRESS ]   PRAMEF9 [ SEEK ]   PRAMEF9 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAMEF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343070
GTEX Portal (Tissue expression)PRAMEF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWM5
Splice isoforms : SwissVarQ5VWM5
PhosPhoSitePlusQ5VWM5
Domains : Interpro (EBI)L_dom-like    PRAME_family   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRAMEF9
DMDM Disease mutations343070
Blocks (Seattle)PRAMEF9
SuperfamilyQ5VWM5
Human Protein AtlasENSG00000204505
Peptide AtlasQ5VWM5
HPRD18596
IPIIPI00335325   IPI00955027   IPI00966165   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWM5
IntAct (EBI)Q5VWM5
FunCoupENSG00000204505
BioGRIDPRAMEF9
STRING (EMBL)PRAMEF9
ZODIACPRAMEF9
Ontologies - Pathways
QuickGOQ5VWM5
Ontology : AmiGOpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIpositive regulation of cell proliferation  negative regulation of apoptotic process  negative regulation of cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkPRAMEF9
Atlas of Cancer Signalling NetworkPRAMEF9
Wikipedia pathwaysPRAMEF9
Orthology - Evolution
OrthoDB343070
GeneTree (enSembl)ENSG00000204505
Phylogenetic Trees/Animal Genes : TreeFamPRAMEF9
HOVERGENQ5VWM5
HOGENOMQ5VWM5
Homologs : HomoloGenePRAMEF9
Homology/Alignments : Family Browser (UCSC)PRAMEF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAMEF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAMEF9
dbVarPRAMEF9
ClinVarPRAMEF9
1000_GenomesPRAMEF9 
Exome Variant ServerPRAMEF9
ExAC (Exome Aggregation Consortium)PRAMEF9 (select the gene name)
Genetic variants : HAPMAP343070
Genomic Variants (DGV)PRAMEF9 [DGVbeta]
DECIPHERPRAMEF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAMEF9 
Mutations
ICGC Data PortalPRAMEF9 
TCGA Data PortalPRAMEF9 
Broad Tumor PortalPRAMEF9
OASIS PortalPRAMEF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAMEF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAMEF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAMEF9
DgiDB (Drug Gene Interaction Database)PRAMEF9
DoCM (Curated mutations)PRAMEF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAMEF9 (select a term)
intoGenPRAMEF9
Cancer3DPRAMEF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRAMEF9
Genetic Testing Registry PRAMEF9
NextProtQ5VWM5 [Medical]
TSGene343070
GENETestsPRAMEF9
Target ValidationPRAMEF9
Huge Navigator PRAMEF9 [HugePedia]
snp3D : Map Gene to Disease343070
BioCentury BCIQPRAMEF9
ClinGenPRAMEF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343070
Chemical/Pharm GKB GenePA142671146
Clinical trialPRAMEF9
Miscellaneous
canSAR (ICR)PRAMEF9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAMEF9
EVEXPRAMEF9
GoPubMedPRAMEF9
iHOPPRAMEF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:50:54 CEST 2017

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