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PRAP1 (proline rich acidic protein 1)

Identity

Alias_symbol (synonym)UPA
Other aliasPRO1195
HGNC (Hugo) PRAP1
LocusID (NCBI) 118471
Atlas_Id 53412
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133347340 and ends at 133352683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRAP1   23304
Cards
Entrez_Gene (NCBI)PRAP1  118471  proline rich acidic protein 1
AliasesPRO1195; UPA
GeneCards (Weizmann)PRAP1
Ensembl hg19 (Hinxton)ENSG00000165828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165828 [Gene_View]  chr10:133347340-133352683 [Contig_View]  PRAP1 [Vega]
ICGC DataPortalENSG00000165828
TCGA cBioPortalPRAP1
AceView (NCBI)PRAP1
Genatlas (Paris)PRAP1
WikiGenes118471
SOURCE (Princeton)PRAP1
Genetics Home Reference (NIH)PRAP1
Genomic and cartography
GoldenPath hg38 (UCSC)PRAP1  -     chr10:133347340-133352683 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRAP1  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblPRAP1 - 10q26.3 [CytoView hg19]  PRAP1 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIPRAP1 [Mapview hg19]  PRAP1 [Mapview hg38]
OMIM609776   
Gene and transcription
Genbank (Entrez)AF123768 AF421885 AY158074 AY358908 BC029447
RefSeq transcript (Entrez)NM_001145201 NM_145202
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRAP1
Cluster EST : UnigeneHs.15951 [ NCBI ]
CGAP (NCI)Hs.15951
Alternative Splicing GalleryENSG00000165828
Gene ExpressionPRAP1 [ NCBI-GEO ]   PRAP1 [ EBI - ARRAY_EXPRESS ]   PRAP1 [ SEEK ]   PRAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118471
GTEX Portal (Tissue expression)PRAP1
Human Protein AtlasENSG00000165828-PRAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NZ9
Splice isoforms : SwissVarQ96NZ9
PhosPhoSitePlusQ96NZ9
Domains : Interpro (EBI)PRAP   
Domain families : Pfam (Sanger)PRAP (PF15314)   
Domain families : Pfam (NCBI)pfam15314   
Conserved Domain (NCBI)PRAP1
DMDM Disease mutations118471
Blocks (Seattle)PRAP1
SuperfamilyQ96NZ9
Human Protein Atlas [tissue]ENSG00000165828-PRAP1 [tissue]
Peptide AtlasQ96NZ9
HPRD17898
IPIIPI00465255   IPI00855928   IPI00855900   IPI00855875   
Protein Interaction databases
DIP (DOE-UCLA)Q96NZ9
IntAct (EBI)Q96NZ9
FunCoupENSG00000165828
BioGRIDPRAP1
STRING (EMBL)PRAP1
ZODIACPRAP1
Ontologies - Pathways
QuickGOQ96NZ9
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkPRAP1
Atlas of Cancer Signalling NetworkPRAP1
Wikipedia pathwaysPRAP1
Orthology - Evolution
OrthoDB118471
GeneTree (enSembl)ENSG00000165828
Phylogenetic Trees/Animal Genes : TreeFamPRAP1
HOVERGENQ96NZ9
HOGENOMQ96NZ9
Homologs : HomoloGenePRAP1
Homology/Alignments : Family Browser (UCSC)PRAP1
Gene fusions - Rearrangements
Tumor Fusion PortalPRAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRAP1
dbVarPRAP1
ClinVarPRAP1
1000_GenomesPRAP1 
Exome Variant ServerPRAP1
ExAC (Exome Aggregation Consortium)ENSG00000165828
GNOMAD BrowserENSG00000165828
Genetic variants : HAPMAP118471
Genomic Variants (DGV)PRAP1 [DGVbeta]
DECIPHERPRAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRAP1 
Mutations
ICGC Data PortalPRAP1 
TCGA Data PortalPRAP1 
Broad Tumor PortalPRAP1
OASIS PortalPRAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRAP1
DgiDB (Drug Gene Interaction Database)PRAP1
DoCM (Curated mutations)PRAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRAP1 (select a term)
intoGenPRAP1
Cancer3DPRAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609776   
Orphanet
DisGeNETPRAP1
MedgenPRAP1
Genetic Testing Registry PRAP1
NextProtQ96NZ9 [Medical]
TSGene118471
GENETestsPRAP1
Target ValidationPRAP1
Huge Navigator PRAP1 [HugePedia]
snp3D : Map Gene to Disease118471
BioCentury BCIQPRAP1
ClinGenPRAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118471
Chemical/Pharm GKB GenePA134981678
Clinical trialPRAP1
Miscellaneous
canSAR (ICR)PRAP1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRAP1
EVEXPRAP1
GoPubMedPRAP1
iHOPPRAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:30:10 CET 2017

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