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PRB1 (proline rich protein BstNI subfamily 1)

Identity

Alias_symbol (synonym)PM
PMF
PMS
PRB1M
PRB1L
Other alias
HGNC (Hugo) PRB1
LocusID (NCBI) 5542
Atlas_Id 72188
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 11351823 and ends at 11355590 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRB1   9337
Cards
Entrez_Gene (NCBI)PRB1  5542  proline rich protein BstNI subfamily 1
AliasesPM; PMF; PMS; PRB1L; 
PRB1M
GeneCards (Weizmann)PRB1
Ensembl hg19 (Hinxton)ENSG00000251655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251655 [Gene_View]  chr12:11351823-11355590 [Contig_View]  PRB1 [Vega]
ICGC DataPortalENSG00000251655
TCGA cBioPortalPRB1
AceView (NCBI)PRB1
Genatlas (Paris)PRB1
WikiGenes5542
SOURCE (Princeton)PRB1
Genetics Home Reference (NIH)PRB1
Genomic and cartography
GoldenPath hg38 (UCSC)PRB1  -     chr12:11351823-11355590 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRB1  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblPRB1 - 12p13.2 [CytoView hg19]  PRB1 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIPRB1 [Mapview hg19]  PRB1 [Mapview hg38]
OMIM180989   
Gene and transcription
Genbank (Entrez)BC044827 BC141917 BG216715 BX485626 BX487087
RefSeq transcript (Entrez)NM_005039 NM_199353 NM_199354
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187588 NT_187658
Consensus coding sequences : CCDS (NCBI)PRB1
Cluster EST : UnigeneHs.631726 [ NCBI ]
CGAP (NCI)Hs.631726
Alternative Splicing GalleryENSG00000251655
Gene ExpressionPRB1 [ NCBI-GEO ]   PRB1 [ EBI - ARRAY_EXPRESS ]   PRB1 [ SEEK ]   PRB1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5542
GTEX Portal (Tissue expression)PRB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04280   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04280  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04280
Splice isoforms : SwissVarP04280
PhosPhoSitePlusP04280
Domains : Interpro (EBI)Pro-rich   
Domain families : Pfam (Sanger)Pro-rich (PF15240)   
Domain families : Pfam (NCBI)pfam15240   
Domain families : Smart (EMBL)Pro-rich (SM01412)  
Conserved Domain (NCBI)PRB1
DMDM Disease mutations5542
Blocks (Seattle)PRB1
SuperfamilyP04280
Human Protein AtlasENSG00000251655
Peptide AtlasP04280
HPRD01623
IPIIPI00023038   IPI00410352   IPI00399260   IPI00456158   
Protein Interaction databases
DIP (DOE-UCLA)P04280
IntAct (EBI)P04280
FunCoupENSG00000251655
BioGRIDPRB1
STRING (EMBL)PRB1
ZODIACPRB1
Ontologies - Pathways
QuickGOP04280
Ontology : AmiGOmolecular_function  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  extracellular region  biological_process  
Pathways : KEGGSalivary secretion   
NDEx NetworkPRB1
Atlas of Cancer Signalling NetworkPRB1
Wikipedia pathwaysPRB1
Orthology - Evolution
OrthoDB5542
GeneTree (enSembl)ENSG00000251655
Phylogenetic Trees/Animal Genes : TreeFamPRB1
HOVERGENP04280
HOGENOMP04280
Homologs : HomoloGenePRB1
Homology/Alignments : Family Browser (UCSC)PRB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRB1
dbVarPRB1
ClinVarPRB1
1000_GenomesPRB1 
Exome Variant ServerPRB1
ExAC (Exome Aggregation Consortium)PRB1 (select the gene name)
Genetic variants : HAPMAP5542
Genomic Variants (DGV)PRB1 [DGVbeta]
DECIPHERPRB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRB1 
Mutations
ICGC Data PortalPRB1 
TCGA Data PortalPRB1 
Broad Tumor PortalPRB1
OASIS PortalPRB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRB1
DgiDB (Drug Gene Interaction Database)PRB1
DoCM (Curated mutations)PRB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRB1 (select a term)
intoGenPRB1
Cancer3DPRB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180989   
Orphanet
MedgenPRB1
Genetic Testing Registry PRB1
NextProtP04280 [Medical]
TSGene5542
GENETestsPRB1
Target ValidationPRB1
Huge Navigator PRB1 [HugePedia]
snp3D : Map Gene to Disease5542
BioCentury BCIQPRB1
ClinGenPRB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5542
Chemical/Pharm GKB GenePA33699
Clinical trialPRB1
Miscellaneous
canSAR (ICR)PRB1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRB1
EVEXPRB1
GoPubMedPRB1
iHOPPRB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:14 CEST 2017

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