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PRB2 (proline-rich protein BstNI subfamily 2)

Identity

Alias_symbol (synonym)PRPPRB1
Ps
cP7
Other aliasIB-9
HGNC (Hugo) PRB2
LocusID (NCBI) 653247
Atlas_Id 72189
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 11544474 and ends at 11548498 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRB2 (12p13.2) / C1S (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRB2   9338
Cards
Entrez_Gene (NCBI)PRB2  653247  proline-rich protein BstNI subfamily 2
AliasesIB-9; PRPPRB1; Ps; cP7
GeneCards (Weizmann)PRB2
Ensembl hg19 (Hinxton)ENSG00000121335 [Gene_View]  chr12:11544474-11548498 [Contig_View]  PRB2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121335 [Gene_View]  chr12:11544474-11548498 [Contig_View]  PRB2 [Vega]
ICGC DataPortalENSG00000121335
TCGA cBioPortalPRB2
AceView (NCBI)PRB2
Genatlas (Paris)PRB2
WikiGenes653247
SOURCE (Princeton)PRB2
Genetics Home Reference (NIH)PRB2
Genomic and cartography
GoldenPath hg19 (UCSC)PRB2  -     chr12:11544474-11548498 -  12p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRB2  -     12p13.2   [Description]    (hg38-Dec_2013)
EnsemblPRB2 - 12p13.2 [CytoView hg19]  PRB2 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIPRB2 [Mapview hg19]  PRB2 [Mapview hg38]
OMIM168810   
Gene and transcription
Genbank (Entrez)BX484538 K03208
RefSeq transcript (Entrez)NM_006248
RefSeq genomic (Entrez)NC_000012 NT_009714
Consensus coding sequences : CCDS (NCBI)PRB2
Cluster EST : UnigeneHs.654486 [ NCBI ]
CGAP (NCI)Hs.654486
Alternative Splicing GalleryENSG00000121335
Gene ExpressionPRB2 [ NCBI-GEO ]   PRB2 [ EBI - ARRAY_EXPRESS ]   PRB2 [ SEEK ]   PRB2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653247
GTEX Portal (Tissue expression)PRB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02812   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02812  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02812
Splice isoforms : SwissVarP02812
PhosPhoSitePlusP02812
Domains : Interpro (EBI)Pro-rich   
Domain families : Pfam (Sanger)Pro-rich (PF15240)   
Domain families : Pfam (NCBI)pfam15240   
Conserved Domain (NCBI)PRB2
DMDM Disease mutations653247
Blocks (Seattle)PRB2
SuperfamilyP02812
Human Protein AtlasENSG00000121335
Peptide AtlasP02812
HPRD18511
IPIIPI00552432   IPI00816607   IPI00969578   
Protein Interaction databases
DIP (DOE-UCLA)P02812
IntAct (EBI)P02812
FunCoupENSG00000121335
BioGRIDPRB2
STRING (EMBL)PRB2
ZODIACPRB2
Ontologies - Pathways
QuickGOP02812
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  biological_process  
Pathways : KEGGSalivary secretion   
NDEx NetworkPRB2
Atlas of Cancer Signalling NetworkPRB2
Wikipedia pathwaysPRB2
Orthology - Evolution
OrthoDB653247
GeneTree (enSembl)ENSG00000121335
Phylogenetic Trees/Animal Genes : TreeFamPRB2
HOVERGENP02812
HOGENOMP02812
Homologs : HomoloGenePRB2
Homology/Alignments : Family Browser (UCSC)PRB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRB2
dbVarPRB2
ClinVarPRB2
1000_GenomesPRB2 
Exome Variant ServerPRB2
ExAC (Exome Aggregation Consortium)PRB2 (select the gene name)
Genetic variants : HAPMAP653247
Genomic Variants (DGV)PRB2 [DGVbeta]
DECIPHER (Syndromes)12:11544474-11548498  ENSG00000121335
CONAN: Copy Number AnalysisPRB2 
Mutations
ICGC Data PortalPRB2 
TCGA Data PortalPRB2 
Broad Tumor PortalPRB2
OASIS PortalPRB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRB2
DgiDB (Drug Gene Interaction Database)PRB2
DoCM (Curated mutations)PRB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRB2 (select a term)
intoGenPRB2
Cancer3DPRB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM168810   
Orphanet
MedgenPRB2
Genetic Testing Registry PRB2
NextProtP02812 [Medical]
TSGene653247
GENETestsPRB2
Huge Navigator PRB2 [HugePedia]
snp3D : Map Gene to Disease653247
BioCentury BCIQPRB2
ClinGenPRB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653247
Chemical/Pharm GKB GenePA33700
Clinical trialPRB2
Miscellaneous
canSAR (ICR)PRB2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRB2
EVEXPRB2
GoPubMedPRB2
iHOPPRB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:33 CET 2017

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