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PRB4 (proline rich protein BstNI subfamily 4)

Identity

Other aliasPo
HGNC (Hugo) PRB4
LocusID (NCBI) 5545
Atlas_Id 72190
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 11307081 and ends at 11310435 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KALRN (3q21.2) / PRB4 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRB4   9340
Cards
Entrez_Gene (NCBI)PRB4  5545  proline rich protein BstNI subfamily 4
AliasesPo
GeneCards (Weizmann)PRB4
Ensembl hg19 (Hinxton)ENSG00000230657 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230657 [Gene_View]  chr12:11307081-11310435 [Contig_View]  PRB4 [Vega]
ICGC DataPortalENSG00000230657
TCGA cBioPortalPRB4
AceView (NCBI)PRB4
Genatlas (Paris)PRB4
WikiGenes5545
SOURCE (Princeton)PRB4
Genetics Home Reference (NIH)PRB4
Genomic and cartography
GoldenPath hg38 (UCSC)PRB4  -     chr12:11307081-11310435 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRB4  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblPRB4 - 12p13.2 [CytoView hg19]  PRB4 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIPRB4 [Mapview hg19]  PRB4 [Mapview hg38]
OMIM180990   
Gene and transcription
Genbank (Entrez)BC035362 BC128191 BC130386 K03207
RefSeq transcript (Entrez)NM_001261399 NM_002723
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187658
Consensus coding sequences : CCDS (NCBI)PRB4
Cluster EST : UnigeneHs.528651 [ NCBI ]
CGAP (NCI)Hs.528651
Alternative Splicing GalleryENSG00000230657
Gene ExpressionPRB4 [ NCBI-GEO ]   PRB4 [ EBI - ARRAY_EXPRESS ]   PRB4 [ SEEK ]   PRB4 [ MEM ]
Gene Expression Viewer (FireBrowse)PRB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5545
GTEX Portal (Tissue expression)PRB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10163   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP10163  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10163
Splice isoforms : SwissVarP10163
PhosPhoSitePlusP10163
Domains : Interpro (EBI)Pro-rich   
Domain families : Pfam (Sanger)Pro-rich (PF15240)   
Domain families : Pfam (NCBI)pfam15240   
Domain families : Smart (EMBL)Pro-rich (SM01412)  
Conserved Domain (NCBI)PRB4
DMDM Disease mutations5545
Blocks (Seattle)PRB4
SuperfamilyP10163
Human Protein AtlasENSG00000230657
Peptide AtlasP10163
HPRD01624
IPIIPI00019482   IPI00976423   IPI00884451   
Protein Interaction databases
DIP (DOE-UCLA)P10163
IntAct (EBI)P10163
FunCoupENSG00000230657
BioGRIDPRB4
STRING (EMBL)PRB4
ZODIACPRB4
Ontologies - Pathways
QuickGOP10163
Ontology : AmiGOmolecular_function  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  extracellular region  biological_process  
NDEx NetworkPRB4
Atlas of Cancer Signalling NetworkPRB4
Wikipedia pathwaysPRB4
Orthology - Evolution
OrthoDB5545
GeneTree (enSembl)ENSG00000230657
Phylogenetic Trees/Animal Genes : TreeFamPRB4
HOVERGENP10163
HOGENOMP10163
Homologs : HomoloGenePRB4
Homology/Alignments : Family Browser (UCSC)PRB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRB4
dbVarPRB4
ClinVarPRB4
1000_GenomesPRB4 
Exome Variant ServerPRB4
ExAC (Exome Aggregation Consortium)PRB4 (select the gene name)
Genetic variants : HAPMAP5545
Genomic Variants (DGV)PRB4 [DGVbeta]
DECIPHERPRB4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRB4 
Mutations
ICGC Data PortalPRB4 
TCGA Data PortalPRB4 
Broad Tumor PortalPRB4
OASIS PortalPRB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRB4
DgiDB (Drug Gene Interaction Database)PRB4
DoCM (Curated mutations)PRB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRB4 (select a term)
intoGenPRB4
Cancer3DPRB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180990   
Orphanet
MedgenPRB4
Genetic Testing Registry PRB4
NextProtP10163 [Medical]
TSGene5545
GENETestsPRB4
Target ValidationPRB4
Huge Navigator PRB4 [HugePedia]
snp3D : Map Gene to Disease5545
BioCentury BCIQPRB4
ClinGenPRB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5545
Chemical/Pharm GKB GenePA33702
Clinical trialPRB4
Miscellaneous
canSAR (ICR)PRB4 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRB4
EVEXPRB4
GoPubMedPRB4
iHOPPRB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:15 CEST 2017

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