Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PRCD (photoreceptor disc component)

Identity

Alias (NCBI)RP36
HGNC (Hugo) PRCD
HGNC Alias symbRP36
LocusID (NCBI) 768206
Atlas_Id 72192
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 76540039 and ends at 76545376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRCD (17q25.1) / CLN6 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRCD   32528
Cards
Entrez_Gene (NCBI)PRCD    photoreceptor disc component
AliasesRP36
GeneCards (Weizmann)PRCD
Ensembl hg19 (Hinxton)ENSG00000214140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214140 [Gene_View]  ENSG00000214140 [Sequence]  chr17:76540039-76545376 [Contig_View]  PRCD [Vega]
ICGC DataPortalENSG00000214140
TCGA cBioPortalPRCD
AceView (NCBI)PRCD
Genatlas (Paris)PRCD
SOURCE (Princeton)PRCD
Genetics Home Reference (NIH)PRCD
Genomic and cartography
GoldenPath hg38 (UCSC)PRCD  -     chr17:76540039-76545376 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRCD  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathPRCD - 17q25.1 [CytoView hg19]  PRCD - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000214140
genome Data Viewer NCBIPRCD [Mapview hg19]  
OMIM610598   610599   
Gene and transcription
Genbank (Entrez)AK054729 AK125617 AL567583 BC043413 BC146898
RefSeq transcript (Entrez)NM_001077620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRCD
Alternative Splicing GalleryENSG00000214140
Gene ExpressionPRCD [ NCBI-GEO ]   PRCD [ EBI - ARRAY_EXPRESS ]   PRCD [ SEEK ]   PRCD [ MEM ]
Gene Expression Viewer (FireBrowse)PRCD [ Firebrowse - Broad ]
GenevisibleExpression of PRCD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)768206
GTEX Portal (Tissue expression)PRCD
Human Protein AtlasENSG00000214140-PRCD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00LT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00LT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00LT1
Splice isoforms : SwissVarQ00LT1
PhosPhoSitePlusQ00LT1
Domains : Interpro (EBI)PRCD   
Domain families : Pfam (Sanger)Rod_cone_degen (PF15201)   
Domain families : Pfam (NCBI)pfam15201   
Conserved Domain (NCBI)PRCD
Blocks (Seattle)PRCD
SuperfamilyQ00LT1
Human Protein Atlas [tissue]ENSG00000214140-PRCD [tissue]
Peptide AtlasQ00LT1
IPIIPI00794199   IPI00791910   
Protein Interaction databases
DIP (DOE-UCLA)Q00LT1
IntAct (EBI)Q00LT1
BioGRIDPRCD
STRING (EMBL)PRCD
ZODIACPRCD
Ontologies - Pathways
QuickGOQ00LT1
Ontology : AmiGOopsin binding  extracellular region  cytoplasm  endoplasmic reticulum  Golgi apparatus  visual perception  photoreceptor outer segment membrane  response to stimulus  
Ontology : EGO-EBIopsin binding  extracellular region  cytoplasm  endoplasmic reticulum  Golgi apparatus  visual perception  photoreceptor outer segment membrane  response to stimulus  
NDEx NetworkPRCD
Atlas of Cancer Signalling NetworkPRCD
Wikipedia pathwaysPRCD
Orthology - Evolution
OrthoDB768206
GeneTree (enSembl)ENSG00000214140
Phylogenetic Trees/Animal Genes : TreeFamPRCD
HOGENOMQ00LT1
Homologs : HomoloGenePRCD
Homology/Alignments : Family Browser (UCSC)PRCD
Gene fusions - Rearrangements
Fusion : QuiverPRCD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRCD [hg38]
dbVarPRCD
ClinVarPRCD
MonarchPRCD
1000_GenomesPRCD 
Exome Variant ServerPRCD
GNOMAD BrowserENSG00000214140
Varsome BrowserPRCD
Genomic Variants (DGV)PRCD [DGVbeta]
DECIPHERPRCD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRCD 
Mutations
ICGC Data PortalPRCD 
TCGA Data PortalPRCD 
Broad Tumor PortalPRCD
OASIS PortalPRCD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRCD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPRCD
Mutations and Diseases : HGMDPRCD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch PRCD
DgiDB (Drug Gene Interaction Database)PRCD
DoCM (Curated mutations)PRCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRCD (select a term)
intoGenPRCD
Cancer3DPRCD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610598    610599   
Orphanet659   
DisGeNETPRCD
MedgenPRCD
Genetic Testing Registry PRCD
NextProtQ00LT1 [Medical]
GENETestsPRCD
Target ValidationPRCD
Huge Navigator PRCD [HugePedia]
ClinGenPRCD
Clinical trials, drugs, therapy
MyCancerGenomePRCD
Protein Interactions : CTD
Pharm GKB GenePA162400025
Clinical trialPRCD
Miscellaneous
canSAR (ICR)PRCD (select the gene name)
HarmonizomePRCD
DataMed IndexPRCD
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRCD
EVEXPRCD
GoPubMedPRCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:23:24 CET 2020
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