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PRCD (photoreceptor disc component)

Identity

Alias_symbol (synonym)RP36
Other alias
HGNC (Hugo) PRCD
LocusID (NCBI) 768206
Atlas_Id 72192
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 76540039 and ends at 76545376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRCD (17q25.1) / CLN6 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRCD   32528
Cards
Entrez_Gene (NCBI)PRCD  768206  photoreceptor disc component
AliasesRP36
GeneCards (Weizmann)PRCD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:76540039-76545376 [Contig_View]  PRCD [Vega]
TCGA cBioPortalPRCD
AceView (NCBI)PRCD
Genatlas (Paris)PRCD
WikiGenes768206
SOURCE (Princeton)PRCD
Genetics Home Reference (NIH)PRCD
Genomic and cartography
GoldenPath hg38 (UCSC)PRCD  -     chr17:76540039-76545376 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRCD  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblPRCD - 17q25.1 [CytoView hg19]  PRCD - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIPRCD [Mapview hg19]  PRCD [Mapview hg38]
OMIM610598   610599   
Gene and transcription
Genbank (Entrez)AK054729 AK125617 AL567583 BC043413 BC146898
RefSeq transcript (Entrez)NM_001077620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRCD
Cluster EST : UnigeneHs.743588 [ NCBI ]
CGAP (NCI)Hs.743588
Gene ExpressionPRCD [ NCBI-GEO ]   PRCD [ EBI - ARRAY_EXPRESS ]   PRCD [ SEEK ]   PRCD [ MEM ]
Gene Expression Viewer (FireBrowse)PRCD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)768206
GTEX Portal (Tissue expression)PRCD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00LT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00LT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00LT1
Splice isoforms : SwissVarQ00LT1
PhosPhoSitePlusQ00LT1
Domains : Interpro (EBI)Rod_cone_degen   
Domain families : Pfam (Sanger)Rod_cone_degen (PF15201)   
Domain families : Pfam (NCBI)pfam15201   
Conserved Domain (NCBI)PRCD
DMDM Disease mutations768206
Blocks (Seattle)PRCD
SuperfamilyQ00LT1
Peptide AtlasQ00LT1
IPIIPI00794199   IPI00791910   
Protein Interaction databases
DIP (DOE-UCLA)Q00LT1
IntAct (EBI)Q00LT1
BioGRIDPRCD
STRING (EMBL)PRCD
ZODIACPRCD
Ontologies - Pathways
QuickGOQ00LT1
Ontology : AmiGOphotoreceptor outer segment  extracellular region  cytoplasm  endoplasmic reticulum  Golgi apparatus  visual perception  integral component of membrane  response to stimulus  
Ontology : EGO-EBIphotoreceptor outer segment  extracellular region  cytoplasm  endoplasmic reticulum  Golgi apparatus  visual perception  integral component of membrane  response to stimulus  
NDEx NetworkPRCD
Atlas of Cancer Signalling NetworkPRCD
Wikipedia pathwaysPRCD
Orthology - Evolution
OrthoDB768206
Phylogenetic Trees/Animal Genes : TreeFamPRCD
HOVERGENQ00LT1
HOGENOMQ00LT1
Homologs : HomoloGenePRCD
Homology/Alignments : Family Browser (UCSC)PRCD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRCD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRCD
dbVarPRCD
ClinVarPRCD
1000_GenomesPRCD 
Exome Variant ServerPRCD
ExAC (Exome Aggregation Consortium)PRCD (select the gene name)
Genetic variants : HAPMAP768206
Genomic Variants (DGV)PRCD [DGVbeta]
DECIPHERPRCD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRCD 
Mutations
ICGC Data PortalPRCD 
TCGA Data PortalPRCD 
Broad Tumor PortalPRCD
OASIS PortalPRCD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRCD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRCD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch PRCD
DgiDB (Drug Gene Interaction Database)PRCD
DoCM (Curated mutations)PRCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRCD (select a term)
intoGenPRCD
Cancer3DPRCD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610598    610599   
Orphanet659   
MedgenPRCD
Genetic Testing Registry PRCD
NextProtQ00LT1 [Medical]
TSGene768206
GENETestsPRCD
Target ValidationPRCD
Huge Navigator PRCD [HugePedia]
snp3D : Map Gene to Disease768206
BioCentury BCIQPRCD
ClinGenPRCD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD768206
Chemical/Pharm GKB GenePA162400025
Clinical trialPRCD
Miscellaneous
canSAR (ICR)PRCD (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRCD
EVEXPRCD
GoPubMedPRCD
iHOPPRCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:15 CEST 2017

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