PRDM11 (PR/SET domain 11)

2003-12-01  

Identity

HGNC
PRDM11
LOCATION
11p11.2
LOCUSID
56981
ALIAS
PFM8
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 56981
MIM: 616347
HGNC: 13996
Ensembl: ENSG00000019485

Variants:

dbSNP: 56981
ClinVar: 56981
TCGA: ENSG00000019485
COSMIC: PRDM11

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000019485ENST00000424263Q9NQV5
ENSG00000019485ENST00000526442E9PJ09
ENSG00000019485ENST00000530656Q9NQV5
ENSG00000019485ENST00000534751H3BSZ2
ENSG00000019485ENST00000622142A0A087WWZ6

Expression (GTEx)

0
5
10
15
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
254997592015Loss of PRDM11 promotes MYC-driven lymphomagenesis.7

Citation

Dessen P

PRDM11 (PR/SET domain 11)

Atlas Genet Cytogenet Oncol Haematol. 2003-12-01

Online version: http://atlasgeneticsoncology.org/gene/41833/prdm11