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PRDM11 (PR/SET domain 11)

Identity

Alias_namesPR domain containing 11
PR domain 11
Alias_symbol (synonym)PFM8
Other alias
HGNC (Hugo) PRDM11
LocusID (NCBI) 56981
Atlas_Id 41833
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 45147343 and ends at 45235124 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRDM11 (11p11.2) / ACCS (11p11.2)PRDM11 (11p11.2) / MRPS9 (2q12.1)PRDM11 11p11.2 / ACCS 11p11.2
PRDM11 11p11.2 / MRPS9 2q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRDM11   13996
Cards
Entrez_Gene (NCBI)PRDM11  56981  PR/SET domain 11
AliasesPFM8
GeneCards (Weizmann)PRDM11
Ensembl hg19 (Hinxton)ENSG00000019485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000019485 [Gene_View]  chr11:45147343-45235124 [Contig_View]  PRDM11 [Vega]
ICGC DataPortalENSG00000019485
TCGA cBioPortalPRDM11
AceView (NCBI)PRDM11
Genatlas (Paris)PRDM11
WikiGenes56981
SOURCE (Princeton)PRDM11
Genetics Home Reference (NIH)PRDM11
Genomic and cartography
GoldenPath hg38 (UCSC)PRDM11  -     chr11:45147343-45235124 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRDM11  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblPRDM11 - 11p11.2 [CytoView hg19]  PRDM11 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIPRDM11 [Mapview hg19]  PRDM11 [Mapview hg38]
OMIM616347   
Gene and transcription
Genbank (Entrez)AA468074 AF275818 AK024304 AK094792 AK097878
RefSeq transcript (Entrez)NM_001256695 NM_001256696 NM_020229
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRDM11
Cluster EST : UnigeneHs.178715 [ NCBI ]
CGAP (NCI)Hs.178715
Alternative Splicing GalleryENSG00000019485
Gene ExpressionPRDM11 [ NCBI-GEO ]   PRDM11 [ EBI - ARRAY_EXPRESS ]   PRDM11 [ SEEK ]   PRDM11 [ MEM ]
Gene Expression Viewer (FireBrowse)PRDM11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56981
GTEX Portal (Tissue expression)PRDM11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQV5
Splice isoforms : SwissVarQ9NQV5
PhosPhoSitePlusQ9NQV5
Domaine pattern : Prosite (Expaxy)SET (PS50280)   
Domains : Interpro (EBI)SET_dom   
Domain families : Pfam (Sanger)SET (PF00856)   
Domain families : Pfam (NCBI)pfam00856   
Conserved Domain (NCBI)PRDM11
DMDM Disease mutations56981
Blocks (Seattle)PRDM11
PDB (SRS)3RAY   
PDB (PDBSum)3RAY   
PDB (IMB)3RAY   
PDB (RSDB)3RAY   
Structural Biology KnowledgeBase3RAY   
SCOP (Structural Classification of Proteins)3RAY   
CATH (Classification of proteins structures)3RAY   
SuperfamilyQ9NQV5
Human Protein AtlasENSG00000019485
Peptide AtlasQ9NQV5
HPRD11456
IPIIPI00329589   IPI00970895   IPI00383895   IPI00977729   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQV5
IntAct (EBI)Q9NQV5
FunCoupENSG00000019485
BioGRIDPRDM11
STRING (EMBL)PRDM11
ZODIACPRDM11
Ontologies - Pathways
QuickGOQ9NQV5
Ontology : AmiGOnucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  methyltransferase activity  methylation  
Ontology : EGO-EBInucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  methyltransferase activity  methylation  
NDEx NetworkPRDM11
Atlas of Cancer Signalling NetworkPRDM11
Wikipedia pathwaysPRDM11
Orthology - Evolution
OrthoDB56981
GeneTree (enSembl)ENSG00000019485
Phylogenetic Trees/Animal Genes : TreeFamPRDM11
HOVERGENQ9NQV5
HOGENOMQ9NQV5
Homologs : HomoloGenePRDM11
Homology/Alignments : Family Browser (UCSC)PRDM11
Gene fusions - Rearrangements
Fusion : MitelmanPRDM11/ACCS [11p11.2/11p11.2]  
Fusion : MitelmanPRDM11/MRPS9 [11p11.2/2q12.1]  [t(2;11)(q12;p11)]  
Fusion: TCGAPRDM11 11p11.2 ACCS 11p11.2 BRCA
Fusion: TCGAPRDM11 11p11.2 MRPS9 2q12.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRDM11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRDM11
dbVarPRDM11
ClinVarPRDM11
1000_GenomesPRDM11 
Exome Variant ServerPRDM11
ExAC (Exome Aggregation Consortium)PRDM11 (select the gene name)
Genetic variants : HAPMAP56981
Genomic Variants (DGV)PRDM11 [DGVbeta]
DECIPHERPRDM11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRDM11 
Mutations
ICGC Data PortalPRDM11 
TCGA Data PortalPRDM11 
Broad Tumor PortalPRDM11
OASIS PortalPRDM11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRDM11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRDM11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRDM11
DgiDB (Drug Gene Interaction Database)PRDM11
DoCM (Curated mutations)PRDM11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRDM11 (select a term)
intoGenPRDM11
Cancer3DPRDM11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616347   
Orphanet
MedgenPRDM11
Genetic Testing Registry PRDM11
NextProtQ9NQV5 [Medical]
TSGene56981
GENETestsPRDM11
Huge Navigator PRDM11 [HugePedia]
snp3D : Map Gene to Disease56981
BioCentury BCIQPRDM11
ClinGenPRDM11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56981
Chemical/Pharm GKB GenePA33709
Clinical trialPRDM11
Miscellaneous
canSAR (ICR)PRDM11 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRDM11
EVEXPRDM11
GoPubMedPRDM11
iHOPPRDM11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:32:39 CEST 2017

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