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PRDM15 (PR/SET domain 15)

Identity

Alias_namesZNF298
C21orf83
chromosome 21 open reading frame 83
PR domain containing 15
PR domain 15
Other aliasPFM15
HGNC (Hugo) PRDM15
LocusID (NCBI) 63977
Atlas_Id 72195
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 41798225 and ends at 41879482 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRDM15   13999
Cards
Entrez_Gene (NCBI)PRDM15  63977  PR/SET domain 15
AliasesC21orf83; PFM15; ZNF298
GeneCards (Weizmann)PRDM15
Ensembl hg19 (Hinxton)ENSG00000141956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141956 [Gene_View]  chr21:41798225-41879482 [Contig_View]  PRDM15 [Vega]
ICGC DataPortalENSG00000141956
TCGA cBioPortalPRDM15
AceView (NCBI)PRDM15
Genatlas (Paris)PRDM15
WikiGenes63977
SOURCE (Princeton)PRDM15
Genetics Home Reference (NIH)PRDM15
Genomic and cartography
GoldenPath hg38 (UCSC)PRDM15  -     chr21:41798225-41879482 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRDM15  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblPRDM15 - 21q22.3 [CytoView hg19]  PRDM15 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIPRDM15 [Mapview hg19]  PRDM15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051812 AB051813 AB051814 AB051814 AB051815
RefSeq transcript (Entrez)NM_001040424 NM_001282934 NM_022115
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRDM15
Cluster EST : UnigeneHs.726680 [ NCBI ]
CGAP (NCI)Hs.726680
Alternative Splicing GalleryENSG00000141956
Gene ExpressionPRDM15 [ NCBI-GEO ]   PRDM15 [ EBI - ARRAY_EXPRESS ]   PRDM15 [ SEEK ]   PRDM15 [ MEM ]
Gene Expression Viewer (FireBrowse)PRDM15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63977
GTEX Portal (Tissue expression)PRDM15
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57071   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57071  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57071
Splice isoforms : SwissVarP57071
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusP57071
Domaine pattern : Prosite (Expaxy)SET (PS50280)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SET_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)PRDM15
DMDM Disease mutations63977
Blocks (Seattle)PRDM15
SuperfamilyP57071
Human Protein AtlasENSG00000141956
Peptide AtlasP57071
HPRD11458
IPIIPI00025702   IPI00983916   IPI00792548   IPI00925051   IPI00871744   IPI00745384   
Protein Interaction databases
DIP (DOE-UCLA)P57071
IntAct (EBI)P57071
FunCoupENSG00000141956
BioGRIDPRDM15
STRING (EMBL)PRDM15
ZODIACPRDM15
Ontologies - Pathways
QuickGOP57071
Ontology : AmiGODNA binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  methyltransferase activity  nuclear body  methylation  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  methyltransferase activity  nuclear body  methylation  metal ion binding  
NDEx NetworkPRDM15
Atlas of Cancer Signalling NetworkPRDM15
Wikipedia pathwaysPRDM15
Orthology - Evolution
OrthoDB63977
GeneTree (enSembl)ENSG00000141956
Phylogenetic Trees/Animal Genes : TreeFamPRDM15
HOVERGENP57071
HOGENOMP57071
Homologs : HomoloGenePRDM15
Homology/Alignments : Family Browser (UCSC)PRDM15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRDM15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRDM15
dbVarPRDM15
ClinVarPRDM15
1000_GenomesPRDM15 
Exome Variant ServerPRDM15
ExAC (Exome Aggregation Consortium)PRDM15 (select the gene name)
Genetic variants : HAPMAP63977
Genomic Variants (DGV)PRDM15 [DGVbeta]
DECIPHERPRDM15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRDM15 
Mutations
ICGC Data PortalPRDM15 
TCGA Data PortalPRDM15 
Broad Tumor PortalPRDM15
OASIS PortalPRDM15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRDM15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRDM15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRDM15
DgiDB (Drug Gene Interaction Database)PRDM15
DoCM (Curated mutations)PRDM15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRDM15 (select a term)
intoGenPRDM15
Cancer3DPRDM15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRDM15
Genetic Testing Registry PRDM15
NextProtP57071 [Medical]
TSGene63977
GENETestsPRDM15
Huge Navigator PRDM15 [HugePedia]
snp3D : Map Gene to Disease63977
BioCentury BCIQPRDM15
ClinGenPRDM15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63977
Chemical/Pharm GKB GenePA33713
Clinical trialPRDM15
Miscellaneous
canSAR (ICR)PRDM15 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRDM15
EVEXPRDM15
GoPubMedPRDM15
iHOPPRDM15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:49:33 CEST 2017

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