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PRDM15 (PR/SET domain 15)

Identity

Alias (NCBI)C21orf83
PFM15
ZNF298
HGNC (Hugo) PRDM15
HGNC Previous nameZNF298
 C21orf83
HGNC Previous namechromosome 21 open reading frame 83
 PR domain containing 15
 PR domain 15
LocusID (NCBI) 63977
Atlas_Id 72195
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 41798225 and ends at 41879344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(19;21)(p13;q22) MAP2K7/PRDM15
t(19;21)(p13;q22) MAP2K7/PRDM15


External links

Nomenclature
HGNC (Hugo)PRDM15   13999
Cards
Entrez_Gene (NCBI)PRDM15    PR/SET domain 15
AliasesC21orf83; PFM15; ZNF298
GeneCards (Weizmann)PRDM15
Ensembl hg19 (Hinxton)ENSG00000141956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141956 [Gene_View]  ENSG00000141956 [Sequence]  chr21:41798225-41879344 [Contig_View]  PRDM15 [Vega]
ICGC DataPortalENSG00000141956
TCGA cBioPortalPRDM15
AceView (NCBI)PRDM15
Genatlas (Paris)PRDM15
SOURCE (Princeton)PRDM15
Genetics Home Reference (NIH)PRDM15
Genomic and cartography
GoldenPath hg38 (UCSC)PRDM15  -     chr21:41798225-41879344 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRDM15  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathPRDM15 - 21q22.3 [CytoView hg19]  PRDM15 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000141956
Genome Data Viewer NCBIPRDM15 [Mapview hg19]  
OMIM617692   
Gene and transcription
Genbank (Entrez)AB051812 AB051813 AB051814 AB051814 AB051815
RefSeq transcript (Entrez)NM_001040424 NM_001282934 NM_022115
Consensus coding sequences : CCDS (NCBI)PRDM15
Gene ExpressionPRDM15 [ NCBI-GEO ]   PRDM15 [ EBI - ARRAY_EXPRESS ]   PRDM15 [ SEEK ]   PRDM15 [ MEM ]
Gene Expression Viewer (FireBrowse)PRDM15 [ Firebrowse - Broad ]
GenevisibleExpression of PRDM15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63977
GTEX Portal (Tissue expression)PRDM15
Human Protein AtlasENSG00000141956-PRDM15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRDM15
Human Protein Atlas [tissue]ENSG00000141956-PRDM15 [tissue]
HPRD11458
Protein Interaction databases
BioGRIDPRDM15
STRING (EMBL)PRDM15
ZODIACPRDM15
Ontologies - Pathways
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPRDM15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:17:05 CEST 2021

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