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PRDM7 (PR/SET domain 7)

Identity

Alias_namesPR domain containing 7
PR domain 7
Alias_symbol (synonym)ZNF910
Other aliasPFM4
HGNC (Hugo) PRDM7
LocusID (NCBI) 11105
Atlas_Id 41837
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 90056566 and ends at 90075930 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRDM7   9351
Cards
Entrez_Gene (NCBI)PRDM7  11105  PR/SET domain 7
AliasesPFM4; ZNF910
GeneCards (Weizmann)PRDM7
Ensembl hg19 (Hinxton)ENSG00000126856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126856 [Gene_View]  chr16:90056566-90075930 [Contig_View]  PRDM7 [Vega]
ICGC DataPortalENSG00000126856
TCGA cBioPortalPRDM7
AceView (NCBI)PRDM7
Genatlas (Paris)PRDM7
WikiGenes11105
SOURCE (Princeton)PRDM7
Genetics Home Reference (NIH)PRDM7
Genomic and cartography
GoldenPath hg38 (UCSC)PRDM7  -     chr16:90056566-90075930 -  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRDM7  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblPRDM7 - 16q24.3 [CytoView hg19]  PRDM7 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIPRDM7 [Mapview hg19]  PRDM7 [Mapview hg38]
OMIM609759   
Gene and transcription
Genbank (Entrez)AF274347 AF274348 AL137711 AM690991 AM690992
RefSeq transcript (Entrez)NM_001098173 NM_052996
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRDM7
Cluster EST : UnigeneHs.406695 [ NCBI ]
CGAP (NCI)Hs.406695
Alternative Splicing GalleryENSG00000126856
Gene ExpressionPRDM7 [ NCBI-GEO ]   PRDM7 [ EBI - ARRAY_EXPRESS ]   PRDM7 [ SEEK ]   PRDM7 [ MEM ]
Gene Expression Viewer (FireBrowse)PRDM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11105
GTEX Portal (Tissue expression)PRDM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQW5
Splice isoforms : SwissVarQ9NQW5
Catalytic activity : Enzyme2.1.1.43 [ Enzyme-Expasy ]   2.1.1.432.1.1.43 [ IntEnz-EBI ]   2.1.1.43 [ BRENDA ]   2.1.1.43 [ KEGG ]   
PhosPhoSitePlusQ9NQW5
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)    SET (PS50280)   
Domains : Interpro (EBI)KRAB    Krueppel-associated_box-rel    SET_dom    SSXRD_motif   
Domain families : Pfam (Sanger)KRAB (PF01352)    SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam01352    pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)PRDM7
DMDM Disease mutations11105
Blocks (Seattle)PRDM7
SuperfamilyQ9NQW5
Human Protein AtlasENSG00000126856
Peptide AtlasQ9NQW5
HPRD17903
IPIIPI00015996   IPI00220812   IPI00845274   IPI00646941   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQW5
IntAct (EBI)Q9NQW5
FunCoupENSG00000126856
BioGRIDPRDM7
STRING (EMBL)PRDM7
ZODIACPRDM7
Ontologies - Pathways
QuickGOQ9NQW5
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  chromosome  regulation of transcription, DNA-templated  histone-lysine N-methyltransferase activity  histone lysine methylation  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  chromosome  regulation of transcription, DNA-templated  histone-lysine N-methyltransferase activity  histone lysine methylation  
NDEx NetworkPRDM7
Atlas of Cancer Signalling NetworkPRDM7
Wikipedia pathwaysPRDM7
Orthology - Evolution
OrthoDB11105
GeneTree (enSembl)ENSG00000126856
Phylogenetic Trees/Animal Genes : TreeFamPRDM7
HOVERGENQ9NQW5
HOGENOMQ9NQW5
Homologs : HomoloGenePRDM7
Homology/Alignments : Family Browser (UCSC)PRDM7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRDM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRDM7
dbVarPRDM7
ClinVarPRDM7
1000_GenomesPRDM7 
Exome Variant ServerPRDM7
ExAC (Exome Aggregation Consortium)PRDM7 (select the gene name)
Genetic variants : HAPMAP11105
Genomic Variants (DGV)PRDM7 [DGVbeta]
DECIPHERPRDM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRDM7 
Mutations
ICGC Data PortalPRDM7 
TCGA Data PortalPRDM7 
Broad Tumor PortalPRDM7
OASIS PortalPRDM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRDM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRDM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRDM7
DgiDB (Drug Gene Interaction Database)PRDM7
DoCM (Curated mutations)PRDM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRDM7 (select a term)
intoGenPRDM7
Cancer3DPRDM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609759   
Orphanet
MedgenPRDM7
Genetic Testing Registry PRDM7
NextProtQ9NQW5 [Medical]
TSGene11105
GENETestsPRDM7
Target ValidationPRDM7
Huge Navigator PRDM7 [HugePedia]
snp3D : Map Gene to Disease11105
BioCentury BCIQPRDM7
ClinGenPRDM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11105
Chemical/Pharm GKB GenePA33719
Clinical trialPRDM7
Miscellaneous
canSAR (ICR)PRDM7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRDM7
EVEXPRDM7
GoPubMedPRDM7
iHOPPRDM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:26:22 CEST 2017

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