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PRELID1 (PRELI domain containing 1)

Identity

Alias_symbol (synonym)CGI-106
PX19
PRELI
Other aliasSBBI12
HGNC (Hugo) PRELID1
LocusID (NCBI) 27166
Atlas_Id 72199
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 177303762 and ends at 177306959 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DHX9 (1q25.3) / PRELID1 (5q35.3)PRELID1 (5q35.3) / NPIPB7 (16q23.1)PSMD3 (17q21.1) / PRELID1 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRELID1   30255
Cards
Entrez_Gene (NCBI)PRELID1  27166  PRELI domain containing 1
AliasesCGI-106; PRELI; PX19; SBBI12
GeneCards (Weizmann)PRELID1
Ensembl hg19 (Hinxton)ENSG00000169230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169230 [Gene_View]  chr5:177303762-177306959 [Contig_View]  PRELID1 [Vega]
ICGC DataPortalENSG00000169230
TCGA cBioPortalPRELID1
AceView (NCBI)PRELID1
Genatlas (Paris)PRELID1
WikiGenes27166
SOURCE (Princeton)PRELID1
Genetics Home Reference (NIH)PRELID1
Genomic and cartography
GoldenPath hg38 (UCSC)PRELID1  -     chr5:177303762-177306959 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRELID1  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblPRELID1 - 5q35.3 [CytoView hg19]  PRELID1 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIPRELID1 [Mapview hg19]  PRELID1 [Mapview hg38]
OMIM605733   
Gene and transcription
Genbank (Entrez)AA844687 AF087858 AF111112 AF112203 AF151864
RefSeq transcript (Entrez)NM_001271828 NM_013237
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRELID1
Cluster EST : UnigeneHs.744904 [ NCBI ]
CGAP (NCI)Hs.744904
Alternative Splicing GalleryENSG00000169230
Gene ExpressionPRELID1 [ NCBI-GEO ]   PRELID1 [ EBI - ARRAY_EXPRESS ]   PRELID1 [ SEEK ]   PRELID1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRELID1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27166
GTEX Portal (Tissue expression)PRELID1
Human Protein AtlasENSG00000169230-PRELID1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y255   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y255  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y255
Splice isoforms : SwissVarQ9Y255
PhosPhoSitePlusQ9Y255
Domaine pattern : Prosite (Expaxy)PRELI_MSF1 (PS50904)   
Domains : Interpro (EBI)PRELI/MSF1_dom   
Domain families : Pfam (Sanger)PRELI (PF04707)   
Domain families : Pfam (NCBI)pfam04707   
Conserved Domain (NCBI)PRELID1
DMDM Disease mutations27166
Blocks (Seattle)PRELID1
SuperfamilyQ9Y255
Human Protein Atlas [tissue]ENSG00000169230-PRELID1 [tissue]
Peptide AtlasQ9Y255
HPRD16149
IPIIPI00001638   IPI00967050   IPI00965554   IPI00965823   IPI00967292   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y255
IntAct (EBI)Q9Y255
FunCoupENSG00000169230
BioGRIDPRELID1
STRING (EMBL)PRELID1
ZODIACPRELID1
Ontologies - Pathways
QuickGOQ9Y255
Ontology : AmiGOprotein binding  nucleoplasm  mitochondrion  mitochondrion  mitochondrial intermembrane space  mitochondrial intermembrane space  apoptotic process  immune response  multicellular organism development  negative regulation of mitochondrial membrane potential  positive regulation of endopeptidase activity  phospholipid transport  regulation of apoptotic process  negative regulation of apoptotic process  negative regulation of apoptotic process  protein complex  regulation of T cell differentiation  regulation of mitochondrial membrane potential  positive regulation of T cell apoptotic process  negative regulation of release of cytochrome c from mitochondria  regulation of membrane lipid distribution  positive regulation of cellular respiration  phosphatidic acid transporter activity  positive regulation of phospholipid transport  
Ontology : EGO-EBIprotein binding  nucleoplasm  mitochondrion  mitochondrion  mitochondrial intermembrane space  mitochondrial intermembrane space  apoptotic process  immune response  multicellular organism development  negative regulation of mitochondrial membrane potential  positive regulation of endopeptidase activity  phospholipid transport  regulation of apoptotic process  negative regulation of apoptotic process  negative regulation of apoptotic process  protein complex  regulation of T cell differentiation  regulation of mitochondrial membrane potential  positive regulation of T cell apoptotic process  negative regulation of release of cytochrome c from mitochondria  regulation of membrane lipid distribution  positive regulation of cellular respiration  phosphatidic acid transporter activity  positive regulation of phospholipid transport  
NDEx NetworkPRELID1
Atlas of Cancer Signalling NetworkPRELID1
Wikipedia pathwaysPRELID1
Orthology - Evolution
OrthoDB27166
GeneTree (enSembl)ENSG00000169230
Phylogenetic Trees/Animal Genes : TreeFamPRELID1
HOVERGENQ9Y255
HOGENOMQ9Y255
Homologs : HomoloGenePRELID1
Homology/Alignments : Family Browser (UCSC)PRELID1
Gene fusions - Rearrangements
Tumor Fusion PortalPRELID1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRELID1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRELID1
dbVarPRELID1
ClinVarPRELID1
1000_GenomesPRELID1 
Exome Variant ServerPRELID1
ExAC (Exome Aggregation Consortium)ENSG00000169230
GNOMAD BrowserENSG00000169230
Genetic variants : HAPMAP27166
Genomic Variants (DGV)PRELID1 [DGVbeta]
DECIPHERPRELID1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRELID1 
Mutations
ICGC Data PortalPRELID1 
TCGA Data PortalPRELID1 
Broad Tumor PortalPRELID1
OASIS PortalPRELID1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRELID1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRELID1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRELID1
DgiDB (Drug Gene Interaction Database)PRELID1
DoCM (Curated mutations)PRELID1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRELID1 (select a term)
intoGenPRELID1
Cancer3DPRELID1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605733   
Orphanet
DisGeNETPRELID1
MedgenPRELID1
Genetic Testing Registry PRELID1
NextProtQ9Y255 [Medical]
TSGene27166
GENETestsPRELID1
Target ValidationPRELID1
Huge Navigator PRELID1 [HugePedia]
snp3D : Map Gene to Disease27166
BioCentury BCIQPRELID1
ClinGenPRELID1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27166
Chemical/Pharm GKB GenePA162400040
Clinical trialPRELID1
Miscellaneous
canSAR (ICR)PRELID1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRELID1
EVEXPRELID1
GoPubMedPRELID1
iHOPPRELID1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:12:52 CET 2017

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