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PRELID2 (PRELI domain containing 2)

Identity

Alias_symbol (synonym)MGC21644
FLJ38376
Other alias-
HGNC (Hugo) PRELID2
LocusID (NCBI) 153768
Atlas_Id 54551
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 145135907 and ends at 145214932 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRELID2 (5q32) / LARS (5q32)PRELID2 (5q32) / MAPK9 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRELID2   28306
Cards
Entrez_Gene (NCBI)PRELID2  153768  PRELI domain containing 2
Aliases
GeneCards (Weizmann)PRELID2
Ensembl hg19 (Hinxton)ENSG00000186314 [Gene_View]  chr5:145135907-145214932 [Contig_View]  PRELID2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186314 [Gene_View]  chr5:145135907-145214932 [Contig_View]  PRELID2 [Vega]
ICGC DataPortalENSG00000186314
TCGA cBioPortalPRELID2
AceView (NCBI)PRELID2
Genatlas (Paris)PRELID2
WikiGenes153768
SOURCE (Princeton)PRELID2
Genetics Home Reference (NIH)PRELID2
Genomic and cartography
GoldenPath hg19 (UCSC)PRELID2  -     chr5:145135907-145214932 -  5q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRELID2  -     5q32   [Description]    (hg38-Dec_2013)
EnsemblPRELID2 - 5q32 [CytoView hg19]  PRELID2 - 5q32 [CytoView hg38]
Mapping of homologs : NCBIPRELID2 [Mapview hg19]  PRELID2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095695 AK125215 BC012033 BC028175 BQ645893
RefSeq transcript (Entrez)NM_138492 NM_182960 NM_205846
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PRELID2
Cluster EST : UnigeneHs.314261 [ NCBI ]
CGAP (NCI)Hs.314261
Alternative Splicing GalleryENSG00000186314
Gene ExpressionPRELID2 [ NCBI-GEO ]   PRELID2 [ EBI - ARRAY_EXPRESS ]   PRELID2 [ SEEK ]   PRELID2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRELID2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153768
GTEX Portal (Tissue expression)PRELID2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N945   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N945  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N945
Splice isoforms : SwissVarQ8N945
PhosPhoSitePlusQ8N945
Domaine pattern : Prosite (Expaxy)PRELI_MSF1 (PS50904)   
Domains : Interpro (EBI)PRELI/MSF1_dom   
Domain families : Pfam (Sanger)PRELI (PF04707)   
Domain families : Pfam (NCBI)pfam04707   
Conserved Domain (NCBI)PRELID2
DMDM Disease mutations153768
Blocks (Seattle)PRELID2
SuperfamilyQ8N945
Human Protein AtlasENSG00000186314
Peptide AtlasQ8N945
HPRD14479
IPIIPI00337607   IPI00337773   IPI00409685   IPI00966731   
Protein Interaction databases
DIP (DOE-UCLA)Q8N945
IntAct (EBI)Q8N945
FunCoupENSG00000186314
BioGRIDPRELID2
STRING (EMBL)PRELID2
ZODIACPRELID2
Ontologies - Pathways
QuickGOQ8N945
Ontology : AmiGOmitochondrial intermembrane space  phospholipid transport  phosphatidic acid transporter activity  
Ontology : EGO-EBImitochondrial intermembrane space  phospholipid transport  phosphatidic acid transporter activity  
NDEx NetworkPRELID2
Atlas of Cancer Signalling NetworkPRELID2
Wikipedia pathwaysPRELID2
Orthology - Evolution
OrthoDB153768
GeneTree (enSembl)ENSG00000186314
Phylogenetic Trees/Animal Genes : TreeFamPRELID2
HOVERGENQ8N945
HOGENOMQ8N945
Homologs : HomoloGenePRELID2
Homology/Alignments : Family Browser (UCSC)PRELID2
Gene fusions - Rearrangements
Fusion : MitelmanPRELID2/MAPK9 [5q32/5q35.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRELID2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRELID2
dbVarPRELID2
ClinVarPRELID2
1000_GenomesPRELID2 
Exome Variant ServerPRELID2
ExAC (Exome Aggregation Consortium)PRELID2 (select the gene name)
Genetic variants : HAPMAP153768
Genomic Variants (DGV)PRELID2 [DGVbeta]
DECIPHER (Syndromes)5:145135907-145214932  ENSG00000186314
CONAN: Copy Number AnalysisPRELID2 
Mutations
ICGC Data PortalPRELID2 
TCGA Data PortalPRELID2 
Broad Tumor PortalPRELID2
OASIS PortalPRELID2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRELID2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRELID2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRELID2
DgiDB (Drug Gene Interaction Database)PRELID2
DoCM (Curated mutations)PRELID2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRELID2 (select a term)
intoGenPRELID2
Cancer3DPRELID2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRELID2
Genetic Testing Registry PRELID2
NextProtQ8N945 [Medical]
TSGene153768
GENETestsPRELID2
Huge Navigator PRELID2 [HugePedia]
snp3D : Map Gene to Disease153768
BioCentury BCIQPRELID2
ClinGenPRELID2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153768
Chemical/Pharm GKB GenePA162400041
Clinical trialPRELID2
Miscellaneous
canSAR (ICR)PRELID2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRELID2
EVEXPRELID2
GoPubMedPRELID2
iHOPPRELID2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:22:50 CET 2017

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