Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRELID3A (PRELI domain containing 3A)

Identity

Alias_namesC18orf43
SLMO1
chromosome 18 open reading frame 43
slowmo homolog 1 (Drosophila)
Alias_symbol (synonym)HFL-EDDG1
FLJ31484
Other alias
HGNC (Hugo) PRELID3A
LocusID (NCBI) 10650
Atlas_Id 77753
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12407896 and ends at 12432237 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRELID3A   24639
Cards
Entrez_Gene (NCBI)PRELID3A  10650  PRELI domain containing 3A
AliasesC18orf43; HFL-EDDG1; SLMO1
GeneCards (Weizmann)PRELID3A
Ensembl hg19 (Hinxton)ENSG00000141391 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141391 [Gene_View]  ENSG00000141391 [Sequence]  chr18:12407896-12432237 [Contig_View]  PRELID3A [Vega]
ICGC DataPortalENSG00000141391
TCGA cBioPortalPRELID3A
AceView (NCBI)PRELID3A
Genatlas (Paris)PRELID3A
WikiGenes10650
SOURCE (Princeton)PRELID3A
Genetics Home Reference (NIH)PRELID3A
Genomic and cartography
GoldenPath hg38 (UCSC)PRELID3A  -     chr18:12407896-12432237 +  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRELID3A  -     18p11.21   [Description]    (hg19-Feb_2009)
EnsemblPRELID3A - 18p11.21 [CytoView hg19]  PRELID3A - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIPRELID3A [Mapview hg19]  PRELID3A [Mapview hg38]
OMIM616545   
Gene and transcription
Genbank (Entrez)AF048849 AK056046 AK303325 AL359942 BC007528
RefSeq transcript (Entrez)NM_001142405 NM_001142406 NM_006553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRELID3A
Cluster EST : UnigeneHs.514718 [ NCBI ]
CGAP (NCI)Hs.514718
Alternative Splicing GalleryENSG00000141391
Gene ExpressionPRELID3A [ NCBI-GEO ]   PRELID3A [ EBI - ARRAY_EXPRESS ]   PRELID3A [ SEEK ]   PRELID3A [ MEM ]
Gene Expression Viewer (FireBrowse)PRELID3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10650
GTEX Portal (Tissue expression)PRELID3A
Human Protein AtlasENSG00000141391-PRELID3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N28
Splice isoforms : SwissVarQ96N28
PhosPhoSitePlusQ96N28
Domaine pattern : Prosite (Expaxy)PRELI_MSF1 (PS50904)   
Domains : Interpro (EBI)PRELI/MSF1_dom   
Domain families : Pfam (Sanger)PRELI (PF04707)   
Domain families : Pfam (NCBI)pfam04707   
Conserved Domain (NCBI)PRELID3A
DMDM Disease mutations10650
Blocks (Seattle)PRELID3A
PDB (RSDB)4XZV   
PDB Europe4XZV   
PDB (PDBSum)4XZV   
PDB (IMB)4XZV   
Structural Biology KnowledgeBase4XZV   
SCOP (Structural Classification of Proteins)4XZV   
CATH (Classification of proteins structures)4XZV   
SuperfamilyQ96N28
Human Protein Atlas [tissue]ENSG00000141391-PRELID3A [tissue]
Peptide AtlasQ96N28
HPRD09981
IPIIPI00795625   IPI00386804   IPI00298490   
Protein Interaction databases
DIP (DOE-UCLA)Q96N28
IntAct (EBI)Q96N28
FunCoupENSG00000141391
BioGRIDPRELID3A
STRING (EMBL)PRELID3A
ZODIACPRELID3A
Ontologies - Pathways
QuickGOQ96N28
Ontology : AmiGOprotein binding  mitochondrion  phospholipid transport  positive regulation of protein targeting to mitochondrion  phosphatidic acid transporter activity  
Ontology : EGO-EBIprotein binding  mitochondrion  phospholipid transport  positive regulation of protein targeting to mitochondrion  phosphatidic acid transporter activity  
NDEx NetworkPRELID3A
Atlas of Cancer Signalling NetworkPRELID3A
Wikipedia pathwaysPRELID3A
Orthology - Evolution
OrthoDB10650
GeneTree (enSembl)ENSG00000141391
Phylogenetic Trees/Animal Genes : TreeFamPRELID3A
HOGENOMQ96N28
Homologs : HomoloGenePRELID3A
Homology/Alignments : Family Browser (UCSC)PRELID3A
Gene fusions - Rearrangements
Fusion : QuiverPRELID3A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRELID3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRELID3A
dbVarPRELID3A
ClinVarPRELID3A
1000_GenomesPRELID3A 
Exome Variant ServerPRELID3A
ExAC (Exome Aggregation Consortium)ENSG00000141391
GNOMAD BrowserENSG00000141391
Varsome BrowserPRELID3A
Genetic variants : HAPMAP10650
Genomic Variants (DGV)PRELID3A [DGVbeta]
DECIPHERPRELID3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRELID3A 
Mutations
ICGC Data PortalPRELID3A 
TCGA Data PortalPRELID3A 
Broad Tumor PortalPRELID3A
OASIS PortalPRELID3A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRELID3A
BioMutasearch PRELID3A
DgiDB (Drug Gene Interaction Database)PRELID3A
DoCM (Curated mutations)PRELID3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRELID3A (select a term)
intoGenPRELID3A
Cancer3DPRELID3A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616545   
Orphanet
DisGeNETPRELID3A
MedgenPRELID3A
Genetic Testing Registry PRELID3A
NextProtQ96N28 [Medical]
TSGene10650
GENETestsPRELID3A
Target ValidationPRELID3A
Huge Navigator PRELID3A [HugePedia]
snp3D : Map Gene to Disease10650
BioCentury BCIQPRELID3A
ClinGenPRELID3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10650
Chemical/Pharm GKB GenePA162403903
Clinical trialPRELID3A
Miscellaneous
canSAR (ICR)PRELID3A (select the gene name)
DataMed IndexPRELID3A
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRELID3A
EVEXPRELID3A
GoPubMedPRELID3A
iHOPPRELID3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Feb 14 15:55:59 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.