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PRELID3B (PRELI domain containing 3B)

Identity

Alias_namesC20orf45
SLMO2
chromosome 20 open reading frame 45
slowmo homolog 2 (Drosophila)
Alias_symbol (synonym)dJ543J19.5
Other alias
HGNC (Hugo) PRELID3B
LocusID (NCBI) 51012
Atlas_Id 77770
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 59033145 and ends at 59042846 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRELID3B (20q13.32) / TRAPPC10 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRELID3B   15892
Cards
Entrez_Gene (NCBI)PRELID3B  51012  PRELI domain containing 3B
AliasesC20orf45; SLMO2; dJ543J19.5
GeneCards (Weizmann)PRELID3B
Ensembl hg19 (Hinxton)ENSG00000101166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101166 [Gene_View]  chr20:59033145-59042846 [Contig_View]  PRELID3B [Vega]
ICGC DataPortalENSG00000101166
TCGA cBioPortalPRELID3B
AceView (NCBI)PRELID3B
Genatlas (Paris)PRELID3B
WikiGenes51012
SOURCE (Princeton)PRELID3B
Genetics Home Reference (NIH)PRELID3B
Genomic and cartography
GoldenPath hg38 (UCSC)PRELID3B  -     chr20:59033145-59042846 -  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRELID3B  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblPRELID3B - 20q13.32 [CytoView hg19]  PRELID3B - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBIPRELID3B [Mapview hg19]  PRELID3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151865 AK002157 AK298135 AK314449 BC010649
RefSeq transcript (Entrez)NM_001256403 NM_016045
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRELID3B
Cluster EST : UnigeneHs.656865 [ NCBI ]
CGAP (NCI)Hs.656865
Alternative Splicing GalleryENSG00000101166
Gene ExpressionPRELID3B [ NCBI-GEO ]   PRELID3B [ EBI - ARRAY_EXPRESS ]   PRELID3B [ SEEK ]   PRELID3B [ MEM ]
Gene Expression Viewer (FireBrowse)PRELID3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51012
GTEX Portal (Tissue expression)PRELID3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3B1
Splice isoforms : SwissVarQ9Y3B1
PhosPhoSitePlusQ9Y3B1
Domaine pattern : Prosite (Expaxy)PRELI_MSF1 (PS50904)   
Domains : Interpro (EBI)PRELI/MSF1_dom   
Domain families : Pfam (Sanger)PRELI (PF04707)   
Domain families : Pfam (NCBI)pfam04707   
Conserved Domain (NCBI)PRELID3B
DMDM Disease mutations51012
Blocks (Seattle)PRELID3B
SuperfamilyQ9Y3B1
Human Protein AtlasENSG00000101166
Peptide AtlasQ9Y3B1
HPRD12771
IPIIPI00219778   IPI00552404   IPI00975539   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3B1
IntAct (EBI)Q9Y3B1
FunCoupENSG00000101166
BioGRIDPRELID3B
STRING (EMBL)PRELID3B
ZODIACPRELID3B
Ontologies - Pathways
QuickGOQ9Y3B1
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkPRELID3B
Atlas of Cancer Signalling NetworkPRELID3B
Wikipedia pathwaysPRELID3B
Orthology - Evolution
OrthoDB51012
GeneTree (enSembl)ENSG00000101166
Phylogenetic Trees/Animal Genes : TreeFamPRELID3B
HOVERGENQ9Y3B1
HOGENOMQ9Y3B1
Homologs : HomoloGenePRELID3B
Homology/Alignments : Family Browser (UCSC)PRELID3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRELID3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRELID3B
dbVarPRELID3B
ClinVarPRELID3B
1000_GenomesPRELID3B 
Exome Variant ServerPRELID3B
ExAC (Exome Aggregation Consortium)PRELID3B (select the gene name)
Genetic variants : HAPMAP51012
Genomic Variants (DGV)PRELID3B [DGVbeta]
DECIPHERPRELID3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRELID3B 
Mutations
ICGC Data PortalPRELID3B 
TCGA Data PortalPRELID3B 
Broad Tumor PortalPRELID3B
OASIS PortalPRELID3B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRELID3B
BioMutasearch PRELID3B
DgiDB (Drug Gene Interaction Database)PRELID3B
DoCM (Curated mutations)PRELID3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRELID3B (select a term)
intoGenPRELID3B
Cancer3DPRELID3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRELID3B
Genetic Testing Registry PRELID3B
NextProtQ9Y3B1 [Medical]
TSGene51012
GENETestsPRELID3B
Huge Navigator PRELID3B [HugePedia]
snp3D : Map Gene to Disease51012
BioCentury BCIQPRELID3B
ClinGenPRELID3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51012
Chemical/Pharm GKB GenePA162403922
Clinical trialPRELID3B
Miscellaneous
canSAR (ICR)PRELID3B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRELID3B
EVEXPRELID3B
GoPubMedPRELID3B
iHOPPRELID3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:49:34 CEST 2017

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