Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRG3 (proteoglycan 3)

Identity

Other namesMBP2
MBPH
HGNC (Hugo) PRG3
LocusID (NCBI) 10394
Location 11q12.1
Location_base_pair Starts at 57144242 and ends at 57148623 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRG3   9363
Cards
Entrez_Gene (NCBI)PRG3  10394  proteoglycan 3
GeneCards (Weizmann)PRG3
Ensembl (Hinxton)ENSG00000156575 [Gene_View]  chr11:57144242-57148623 [Contig_View]  PRG3 [Vega]
ICGC DataPortalENSG00000156575
cBioPortalPRG3
AceView (NCBI)PRG3
Genatlas (Paris)PRG3
WikiGenes10394
SOURCE (Princeton)NM_006093
Genomic and cartography
GoldenPath (UCSC)PRG3  -  11q12.1   chr11:57144242-57148623 -  11q12.1   [Description]    (hg19-Feb_2009)
EnsemblPRG3 - 11q12.1 [CytoView]
Mapping of homologs : NCBIPRG3 [Mapview]
OMIM606814   
Gene and transcription
Genbank (Entrez)AF132209 AY358930 BC069126 BC101613 BC113411
RefSeq transcript (Entrez)NM_006093
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838023 NW_004929380
Consensus coding sequences : CCDS (NCBI)PRG3
Cluster EST : UnigeneHs.251386 [ NCBI ]
CGAP (NCI)Hs.251386
Alternative Splicing : Fast-db (Paris)GSHG0005776
Alternative Splicing GalleryENSG00000156575
Gene ExpressionPRG3 [ NCBI-GEO ]     PRG3 [ SEEK ]   PRG3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y8 (Uniprot)
NextProtQ9Y2Y8  [Medical]
With graphics : InterProQ9Y2Y8
Splice isoforms : SwissVarQ9Y2Y8 (Swissvar)
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin [organisation]   C-type_lectin-like [organisation]   C-type_lectin_CS [organisation]   C-type_lectin_fold [organisation]   Eosinophil_major_basic [organisation]  
Related proteins : CluSTrQ9Y2Y8
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
DMDM Disease mutations10394
Blocks (Seattle)Q9Y2Y8
Human Protein AtlasENSG00000156575 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9Y2Y8
HPRD08434
IPIIPI00005778   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y8
IntAct (EBI)Q9Y2Y8
FunCoupENSG00000156575
BioGRIDPRG3
InParanoidQ9Y2Y8
Interologous Interaction database Q9Y2Y8
IntegromeDBPRG3
STRING (EMBL)PRG3
Ontologies - Pathways
Ontology : AmiGOhistamine biosynthetic process  immune response  negative regulation of translation  leukotriene biosynthetic process  carbohydrate binding  neutrophil activation  superoxide anion generation  positive regulation of interleukin-8 biosynthetic process  basophil activation  
Ontology : EGO-EBIhistamine biosynthetic process  immune response  negative regulation of translation  leukotriene biosynthetic process  carbohydrate binding  neutrophil activation  superoxide anion generation  positive regulation of interleukin-8 biosynthetic process  basophil activation  
Protein Interaction DatabasePRG3
Wikipedia pathwaysPRG3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PRG3
snp3D : Map Gene to Disease10394
SNP (GeneSNP Utah)PRG3
SNP : HGBasePRG3
Genetic variants : HAPMAPPRG3
Exome VariantPRG3
1000_GenomesPRG3 
ICGC programENSG00000156575 
Somatic Mutations in Cancer : COSMICPRG3 
CONAN: Copy Number AnalysisPRG3 
Mutations and Diseases : HGMDPRG3
Genomic VariantsPRG3  PRG3 [DGVbeta]
dbVarPRG3
ClinVarPRG3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM606814   
MedgenPRG3
GENETestsPRG3
Disease Genetic AssociationPRG3
Huge Navigator PRG3 [HugePedia]  PRG3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePRG3
Homology/Alignments : Family Browser (UCSC)PRG3
Phylogenetic Trees/Animal Genes : TreeFamPRG3
Chemical/Protein Interactions : CTD10394
Chemical/Pharm GKB GenePA33735
Clinical trialPRG3
Cancer Resource (Charite)ENSG00000156575
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
CoreMinePRG3
iHOPPRG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:13:35 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.