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PRG3 (proteoglycan 3)

Identity

Other namesMBP2
MBPH
HGNC (Hugo) PRG3
LocusID (NCBI) 10394
Atlas_Id 52847
Location 11q12.1
Location_base_pair Starts at 57144242 and ends at 57148623 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRG3   9363
Cards
Entrez_Gene (NCBI)PRG3  10394  proteoglycan 3
GeneCards (Weizmann)PRG3
Ensembl hg19 (Hinxton)ENSG00000156575 [Gene_View]  chr11:57144242-57148623 [Contig_View]  PRG3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156575 [Gene_View]  chr11:57144242-57148623 [Contig_View]  PRG3 [Vega]
ICGC DataPortalENSG00000156575
TCGA cBioPortalPRG3
AceView (NCBI)PRG3
Genatlas (Paris)PRG3
WikiGenes10394
SOURCE (Princeton)PRG3
Genomic and cartography
GoldenPath hg19 (UCSC)PRG3  -     chr11:57144242-57148623 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRG3  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblPRG3 - 11q12.1 [CytoView hg19]  PRG3 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIPRG3 [Mapview hg19]  PRG3 [Mapview hg38]
OMIM606814   
Gene and transcription
Genbank (Entrez)AF132209 AY358930 BC069126 BC101613 BC113411
RefSeq transcript (Entrez)NM_006093
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)PRG3
Cluster EST : UnigeneHs.251386 [ NCBI ]
CGAP (NCI)Hs.251386
Alternative Splicing : Fast-db (Paris)GSHG0005776
Alternative Splicing GalleryENSG00000156575
Gene ExpressionPRG3 [ NCBI-GEO ]     PRG3 [ SEEK ]   PRG3 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10394
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y8 (Uniprot)
NextProtQ9Y2Y8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2Y8
Splice isoforms : SwissVarQ9Y2Y8 (Swissvar)
PhosPhoSitePlusQ9Y2Y8
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    Eosinophil_major_basic   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
DMDM Disease mutations10394
Blocks (Seattle)PRG3
Human Protein AtlasENSG00000156575
Peptide AtlasQ9Y2Y8
HPRD08434
IPIIPI00005778   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y8
IntAct (EBI)Q9Y2Y8
FunCoupENSG00000156575
BioGRIDPRG3
IntegromeDBPRG3
STRING (EMBL)PRG3
ZODIACPRG3
Ontologies - Pathways
QuickGOQ9Y2Y8
Ontology : AmiGOhistamine biosynthetic process  extracellular region  immune response  negative regulation of translation  leukotriene biosynthetic process  carbohydrate binding  neutrophil activation  superoxide anion generation  positive regulation of interleukin-8 biosynthetic process  basophil activation  
Ontology : EGO-EBIhistamine biosynthetic process  extracellular region  immune response  negative regulation of translation  leukotriene biosynthetic process  carbohydrate binding  neutrophil activation  superoxide anion generation  positive regulation of interleukin-8 biosynthetic process  basophil activation  
Protein Interaction DatabasePRG3
Atlas of Cancer Signalling NetworkPRG3
Wikipedia pathwaysPRG3
Orthology - Evolution
OrthoDB10394
GeneTree (enSembl)ENSG00000156575
Phylogenetic Trees/Animal Genes : TreeFamPRG3
Homologs : HomoloGenePRG3
Homology/Alignments : Family Browser (UCSC)PRG3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerPRG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRG3
dbVarPRG3
ClinVarPRG3
1000_GenomesPRG3 
Exome Variant ServerPRG3
Exome Aggregation Consortium (ExAC)ENSG00000156575
SNP (GeneSNP Utah)PRG3
SNP : HGBasePRG3
Genetic variants : HAPMAPPRG3
Genomic Variants (DGV)PRG3 [DGVbeta]
Mutations
ICGC Data PortalPRG3 
TCGA Data PortalPRG3 
Tumor PortalPRG3
TCGA Copy Number PortalPRG3
Somatic Mutations in Cancer : COSMICPRG3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRG3
DgiDB (Drug Gene Interaction Database)PRG3
DoCM (Curated mutations)PRG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRG3 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:57144242-57148623
CONAN: Copy Number AnalysisPRG3 
Mutations and Diseases : HGMDPRG3
OMIM606814   
MedgenPRG3
NextProtQ9Y2Y8 [Medical]
TSGene10394
GENETestsPRG3
Huge Navigator PRG3 [HugePedia]  PRG3 [HugeCancerGEM]
snp3D : Map Gene to Disease10394
BioCentury BCIQPRG3
General knowledge
Chemical/Protein Interactions : CTD10394
Chemical/Pharm GKB GenePA33735
Clinical trialPRG3
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRG3
GoPubMedPRG3
iHOPPRG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:18:35 CET 2016

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