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PRG4 (proteoglycan 4)

Identity

Alias_namesCACP
proteoglycan 4
Alias_symbol (synonym)JCAP
SZP
MSF
HAPO
bG174L6.2
FLJ32635
Other alias
HGNC (Hugo) PRG4
LocusID (NCBI) 23572
Atlas_Id 41843
Location 1q31.1  [Link to chromosome band 1q31]
Location_base_pair Starts at 186296273 and ends at 186314562 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRG4   9364
Cards
Entrez_Gene (NCBI)PRG4  23572  proteoglycan 4
AliasesCACP; HAPO; JCAP; MSF; 
SZP
GeneCards (Weizmann)PRG4
Ensembl hg19 (Hinxton)ENSG00000116690 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116690 [Gene_View]  chr1:186296273-186314562 [Contig_View]  PRG4 [Vega]
ICGC DataPortalENSG00000116690
TCGA cBioPortalPRG4
AceView (NCBI)PRG4
Genatlas (Paris)PRG4
WikiGenes23572
SOURCE (Princeton)PRG4
Genetics Home Reference (NIH)PRG4
Genomic and cartography
GoldenPath hg38 (UCSC)PRG4  -     chr1:186296273-186314562 +  1q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRG4  -     1q31.1   [Description]    (hg19-Feb_2009)
EnsemblPRG4 - 1q31.1 [CytoView hg19]  PRG4 - 1q31.1 [CytoView hg38]
Mapping of homologs : NCBIPRG4 [Mapview hg19]  PRG4 [Mapview hg38]
OMIM208250   604283   
Gene and transcription
Genbank (Entrez)AH013925 AH013925 AK057197 AK131434 AK297718
RefSeq transcript (Entrez)NM_001127708 NM_001127709 NM_001127710 NM_001303232 NM_005807
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRG4
Cluster EST : UnigeneHs.647723 [ NCBI ]
CGAP (NCI)Hs.647723
Alternative Splicing GalleryENSG00000116690
Gene ExpressionPRG4 [ NCBI-GEO ]   PRG4 [ EBI - ARRAY_EXPRESS ]   PRG4 [ SEEK ]   PRG4 [ MEM ]
Gene Expression Viewer (FireBrowse)PRG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23572
GTEX Portal (Tissue expression)PRG4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92954   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92954  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92954
Splice isoforms : SwissVarQ92954
PhosPhoSitePlusQ92954
Domaine pattern : Prosite (Expaxy)HEMOPEXIN (PS00024)    HEMOPEXIN_2 (PS51642)    SMB_1 (PS00524)    SMB_2 (PS50958)   
Domains : Interpro (EBI)Hemopexin-like_dom    Hemopexin-like_repeat    Hemopexin_CS    Somatomedin_B_chordata    Somatomedin_B_dom   
Domain families : Pfam (Sanger)Hemopexin (PF00045)    Somatomedin_B (PF01033)   
Domain families : Pfam (NCBI)pfam00045    pfam01033   
Domain families : Smart (EMBL)HX (SM00120)  SO (SM00201)  
Conserved Domain (NCBI)PRG4
DMDM Disease mutations23572
Blocks (Seattle)PRG4
SuperfamilyQ92954
Human Protein AtlasENSG00000116690
Peptide AtlasQ92954
HPRD05047
IPIIPI00024825   IPI00655927   IPI00655976   IPI00655676   IPI00656111   IPI00656092   IPI00985171   
Protein Interaction databases
DIP (DOE-UCLA)Q92954
IntAct (EBI)Q92954
FunCoupENSG00000116690
BioGRIDPRG4
STRING (EMBL)PRG4
ZODIACPRG4
Ontologies - Pathways
QuickGOQ92954
Ontology : AmiGOscavenger receptor activity  extracellular region  receptor-mediated endocytosis  immune response  cell proliferation  polysaccharide binding  
Ontology : EGO-EBIscavenger receptor activity  extracellular region  receptor-mediated endocytosis  immune response  cell proliferation  polysaccharide binding  
NDEx NetworkPRG4
Atlas of Cancer Signalling NetworkPRG4
Wikipedia pathwaysPRG4
Orthology - Evolution
OrthoDB23572
GeneTree (enSembl)ENSG00000116690
Phylogenetic Trees/Animal Genes : TreeFamPRG4
HOVERGENQ92954
HOGENOMQ92954
Homologs : HomoloGenePRG4
Homology/Alignments : Family Browser (UCSC)PRG4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRG4
dbVarPRG4
ClinVarPRG4
1000_GenomesPRG4 
Exome Variant ServerPRG4
ExAC (Exome Aggregation Consortium)PRG4 (select the gene name)
Genetic variants : HAPMAP23572
Genomic Variants (DGV)PRG4 [DGVbeta]
DECIPHERPRG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRG4 
Mutations
ICGC Data PortalPRG4 
TCGA Data PortalPRG4 
Broad Tumor PortalPRG4
OASIS PortalPRG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRG4
DgiDB (Drug Gene Interaction Database)PRG4
DoCM (Curated mutations)PRG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRG4 (select a term)
intoGenPRG4
Cancer3DPRG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM208250    604283   
Orphanet2583   
MedgenPRG4
Genetic Testing Registry PRG4
NextProtQ92954 [Medical]
TSGene23572
GENETestsPRG4
Target ValidationPRG4
Huge Navigator PRG4 [HugePedia]
snp3D : Map Gene to Disease23572
BioCentury BCIQPRG4
ClinGenPRG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23572
Chemical/Pharm GKB GenePA33736
Clinical trialPRG4
Miscellaneous
canSAR (ICR)PRG4 (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRG4
EVEXPRG4
GoPubMedPRG4
iHOPPRG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:11:37 CEST 2017

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