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PRH1 (proline rich protein HaeIII subfamily 1)

Identity

Alias_symbol (synonym)Pa
Other aliasDb-s
PA
PIF-S
PRH2
Pr1/Pr2
HGNC (Hugo) PRH1
LocusID (NCBI) 5554
Atlas_Id 72200
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10880961 and ends at 11171623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DIP2A (21q22.3) / PRH1 (12p13.2)TSPAN9 (12p13.33) / PRH1 (12p13.2)TSPAN9 PRH1
DIP2A PRH1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRH1   9366
Cards
Entrez_Gene (NCBI)PRH1  5554  proline rich protein HaeIII subfamily 1
AliasesDb-s; PA; PIF-S; PRH2; 
Pr1/Pr2
GeneCards (Weizmann)PRH1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:10880961-11171623 [Contig_View]  PRH1 [Vega]
TCGA cBioPortalPRH1
AceView (NCBI)PRH1
Genatlas (Paris)PRH1
WikiGenes5554
SOURCE (Princeton)PRH1
Genetics Home Reference (NIH)PRH1
Genomic and cartography
GoldenPath hg38 (UCSC)PRH1  -     chr12:10880961-11171623 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRH1  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblPRH1 - 12p13.2 [CytoView hg19]  PRH1 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIPRH1 [Mapview hg19]  PRH1 [Mapview hg38]
OMIM168730   
Gene and transcription
Genbank (Entrez)AB593028 AB593029 BC031043 BC064553 BC128192
RefSeq transcript (Entrez)NM_001291314 NM_001291315 NM_006250
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187658 NW_003571050
Consensus coding sequences : CCDS (NCBI)PRH1
Cluster EST : UnigeneHs.731575 [ NCBI ]
CGAP (NCI)Hs.731575
Gene ExpressionPRH1 [ NCBI-GEO ]   PRH1 [ EBI - ARRAY_EXPRESS ]   PRH1 [ SEEK ]   PRH1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5554
GTEX Portal (Tissue expression)PRH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02810   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02810  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02810
Splice isoforms : SwissVarP02810
PhosPhoSitePlusP02810
Domains : Interpro (EBI)Pro-rich   
Domain families : Pfam (Sanger)Pro-rich (PF15240)   
Domain families : Pfam (NCBI)pfam15240   
Domain families : Smart (EMBL)Pro-rich (SM01412)  
Conserved Domain (NCBI)PRH1
DMDM Disease mutations5554
Blocks (Seattle)PRH1
SuperfamilyP02810
Peptide AtlasP02810
HPRD01349
IPIIPI00299078   IPI00470833   IPI00377025   
Protein Interaction databases
DIP (DOE-UCLA)P02810
IntAct (EBI)P02810
BioGRIDPRH1
STRING (EMBL)PRH1
ZODIACPRH1
Ontologies - Pathways
QuickGOP02810
Ontology : AmiGOprotein binding  extracellular space  
Ontology : EGO-EBIprotein binding  extracellular space  
Pathways : KEGGSalivary secretion   
NDEx NetworkPRH1
Atlas of Cancer Signalling NetworkPRH1
Wikipedia pathwaysPRH1
Orthology - Evolution
OrthoDB5554
Phylogenetic Trees/Animal Genes : TreeFamPRH1
HOVERGENP02810
HOGENOMP02810
Homologs : HomoloGenePRH1
Homology/Alignments : Family Browser (UCSC)PRH1
Gene fusions - Rearrangements
Fusion: TCGATSPAN9 PRH1
Fusion: TCGADIP2A PRH1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRH1
dbVarPRH1
ClinVarPRH1
1000_GenomesPRH1 
Exome Variant ServerPRH1
ExAC (Exome Aggregation Consortium)PRH1 (select the gene name)
Genetic variants : HAPMAP5554
Genomic Variants (DGV)PRH1 [DGVbeta]
DECIPHERPRH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRH1 
Mutations
ICGC Data PortalPRH1 
TCGA Data PortalPRH1 
Broad Tumor PortalPRH1
OASIS PortalPRH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRH1
DgiDB (Drug Gene Interaction Database)PRH1
DoCM (Curated mutations)PRH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRH1 (select a term)
intoGenPRH1
Cancer3DPRH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM168730   
Orphanet
MedgenPRH1
Genetic Testing Registry PRH1
NextProtP02810 [Medical]
TSGene5554
GENETestsPRH1
Target ValidationPRH1
Huge Navigator PRH1 [HugePedia]
snp3D : Map Gene to Disease5554
BioCentury BCIQPRH1
ClinGenPRH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5554
Chemical/Pharm GKB GenePA33737
Clinical trialPRH1
Miscellaneous
canSAR (ICR)PRH1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRH1
EVEXPRH1
GoPubMedPRH1
iHOPPRH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:14 CEST 2017

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