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PRH2 (proline rich protein HaeIII subfamily 2)

Identity

Alias_symbol (synonym)Pr
Other aliasPRP-1/PRP-2
pr1/Pr2
HGNC (Hugo) PRH2
LocusID (NCBI) 5555
Atlas_Id 72202
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10929236 and ends at 10934845 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EPS8 (12p12.3) / PRH2 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRH2   9367
Cards
Entrez_Gene (NCBI)PRH2  5555  proline rich protein HaeIII subfamily 2
AliasesPRP-1/PRP-2; Pr; pr1/Pr2
GeneCards (Weizmann)PRH2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:10929236-10934845 [Contig_View]  PRH2 [Vega]
TCGA cBioPortalPRH2
AceView (NCBI)PRH2
Genatlas (Paris)PRH2
WikiGenes5555
SOURCE (Princeton)PRH2
Genetics Home Reference (NIH)PRH2
Genomic and cartography
GoldenPath hg38 (UCSC)PRH2  -     chr12:10929236-10934845 +  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRH2  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblPRH2 - 12p13.2 [CytoView hg19]  PRH2 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIPRH2 [Mapview hg19]  PRH2 [Mapview hg38]
OMIM168790   
Gene and transcription
Genbank (Entrez)BC095488 BC136499 BC141916 BX538206 BX538207
RefSeq transcript (Entrez)NM_001110213 NM_005042
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187658 NW_003571050
Consensus coding sequences : CCDS (NCBI)PRH2
Cluster EST : UnigeneHs.408153 [ NCBI ]
CGAP (NCI)Hs.408153
Gene ExpressionPRH2 [ NCBI-GEO ]   PRH2 [ EBI - ARRAY_EXPRESS ]   PRH2 [ SEEK ]   PRH2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5555
GTEX Portal (Tissue expression)PRH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02810   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02810  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02810
Splice isoforms : SwissVarP02810
PhosPhoSitePlusP02810
Domains : Interpro (EBI)Pro-rich   
Domain families : Pfam (Sanger)Pro-rich (PF15240)   
Domain families : Pfam (NCBI)pfam15240   
Domain families : Smart (EMBL)Pro-rich (SM01412)  
Conserved Domain (NCBI)PRH2
DMDM Disease mutations5555
Blocks (Seattle)PRH2
SuperfamilyP02810
Peptide AtlasP02810
HPRD01350
Protein Interaction databases
DIP (DOE-UCLA)P02810
IntAct (EBI)P02810
BioGRIDPRH2
STRING (EMBL)PRH2
ZODIACPRH2
Ontologies - Pathways
QuickGOP02810
Ontology : AmiGOprotein binding  extracellular space  
Ontology : EGO-EBIprotein binding  extracellular space  
Pathways : KEGGSalivary secretion   
NDEx NetworkPRH2
Atlas of Cancer Signalling NetworkPRH2
Wikipedia pathwaysPRH2
Orthology - Evolution
OrthoDB5555
Phylogenetic Trees/Animal Genes : TreeFamPRH2
HOVERGENP02810
HOGENOMP02810
Homologs : HomoloGenePRH2
Homology/Alignments : Family Browser (UCSC)PRH2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRH2
dbVarPRH2
ClinVarPRH2
1000_GenomesPRH2 
Exome Variant ServerPRH2
ExAC (Exome Aggregation Consortium)PRH2 (select the gene name)
Genetic variants : HAPMAP5555
Genomic Variants (DGV)PRH2 [DGVbeta]
DECIPHERPRH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRH2 
Mutations
ICGC Data PortalPRH2 
TCGA Data PortalPRH2 
Broad Tumor PortalPRH2
OASIS PortalPRH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRH2
DgiDB (Drug Gene Interaction Database)PRH2
DoCM (Curated mutations)PRH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRH2 (select a term)
intoGenPRH2
Cancer3DPRH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM168790   
Orphanet
MedgenPRH2
Genetic Testing Registry PRH2
NextProtP02810 [Medical]
TSGene5555
GENETestsPRH2
Huge Navigator PRH2 [HugePedia]
snp3D : Map Gene to Disease5555
BioCentury BCIQPRH2
ClinGenPRH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5555
Chemical/Pharm GKB GenePA33738
Clinical trialPRH2
Miscellaneous
canSAR (ICR)PRH2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRH2
EVEXPRH2
GoPubMedPRH2
iHOPPRH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:49:35 CEST 2017

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