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PRICKLE2-AS1 (PRICKLE2 antisense RNA 1)

Identity

Alias_namesPRICKLE2 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) PRICKLE2-AS1
LocusID (NCBI) 100652759
Atlas_Id 72203
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 64067964 and ends at 64103131 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRICKLE2-AS1   40916
Cards
Entrez_Gene (NCBI)PRICKLE2-AS1  100652759  PRICKLE2 antisense RNA 1
Aliases
GeneCards (Weizmann)PRICKLE2-AS1
Ensembl hg19 (Hinxton)ENSG00000241111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241111 [Gene_View]  chr3:64067964-64103131 [Contig_View]  PRICKLE2-AS1 [Vega]
ICGC DataPortalENSG00000241111
TCGA cBioPortalPRICKLE2-AS1
AceView (NCBI)PRICKLE2-AS1
Genatlas (Paris)PRICKLE2-AS1
WikiGenes100652759
SOURCE (Princeton)PRICKLE2-AS1
Genetics Home Reference (NIH)PRICKLE2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PRICKLE2-AS1  -     chr3:64067964-64103131 +  3p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRICKLE2-AS1  -     3p14.1   [Description]    (hg19-Feb_2009)
EnsemblPRICKLE2-AS1 - 3p14.1 [CytoView hg19]  PRICKLE2-AS1 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBIPRICKLE2-AS1 [Mapview hg19]  PRICKLE2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL832189
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRICKLE2-AS1
Cluster EST : UnigeneHs.731187 [ NCBI ]
CGAP (NCI)Hs.731187
Alternative Splicing GalleryENSG00000241111
Gene ExpressionPRICKLE2-AS1 [ NCBI-GEO ]   PRICKLE2-AS1 [ EBI - ARRAY_EXPRESS ]   PRICKLE2-AS1 [ SEEK ]   PRICKLE2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRICKLE2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100652759
GTEX Portal (Tissue expression)PRICKLE2-AS1
Human Protein AtlasENSG00000241111-PRICKLE2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRICKLE2-AS1
DMDM Disease mutations100652759
Blocks (Seattle)PRICKLE2-AS1
Human Protein Atlas [tissue]ENSG00000241111-PRICKLE2-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000241111
BioGRIDPRICKLE2-AS1
STRING (EMBL)PRICKLE2-AS1
ZODIACPRICKLE2-AS1
Ontologies - Pathways
Huge Navigator PRICKLE2-AS1 [HugePedia]
snp3D : Map Gene to Disease100652759
BioCentury BCIQPRICKLE2-AS1
ClinGenPRICKLE2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100652759
Clinical trialPRICKLE2-AS1
Miscellaneous
canSAR (ICR)PRICKLE2-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRICKLE2-AS1
EVEXPRICKLE2-AS1
GoPubMedPRICKLE2-AS1
iHOPPRICKLE2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:48 CET 2017

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