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PRICKLE3 (prickle homolog 3 (Drosophila))

Identity

Alias_namesLMO6
LIM domain only 6
prickle homolog 3 (Drosophila)
Other alias
HGNC (Hugo) PRICKLE3
LocusID (NCBI) 4007
Atlas_Id 72206
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49031151 and ends at 49041346 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRICKLE3 (Xp11.23) / CACNA1F (Xp11.23)PRICKLE3 (Xp11.23) / CD74 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRICKLE3   6645
Cards
Entrez_Gene (NCBI)PRICKLE3  4007  prickle homolog 3 (Drosophila)
AliasesLMO6
GeneCards (Weizmann)PRICKLE3
Ensembl hg19 (Hinxton)ENSG00000012211 [Gene_View]  chrX:49031151-49041346 [Contig_View]  PRICKLE3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000012211 [Gene_View]  chrX:49031151-49041346 [Contig_View]  PRICKLE3 [Vega]
ICGC DataPortalENSG00000012211
TCGA cBioPortalPRICKLE3
AceView (NCBI)PRICKLE3
Genatlas (Paris)PRICKLE3
WikiGenes4007
SOURCE (Princeton)PRICKLE3
Genetics Home Reference (NIH)PRICKLE3
Genomic and cartography
GoldenPath hg19 (UCSC)PRICKLE3  -     chrX:49031151-49041346 -  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRICKLE3  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblPRICKLE3 - Xp11.23 [CytoView hg19]  PRICKLE3 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIPRICKLE3 [Mapview hg19]  PRICKLE3 [Mapview hg38]
OMIM300111   
Gene and transcription
Genbank (Entrez)AA524273 AJ011654 AK299407 AK300866 AK303200
RefSeq transcript (Entrez)NM_001307979 NM_006150
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_017135 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)PRICKLE3
Cluster EST : UnigeneHs.732712 [ NCBI ]
CGAP (NCI)Hs.732712
Alternative Splicing GalleryENSG00000012211
Gene ExpressionPRICKLE3 [ NCBI-GEO ]   PRICKLE3 [ EBI - ARRAY_EXPRESS ]   PRICKLE3 [ SEEK ]   PRICKLE3 [ MEM ]
Gene Expression Viewer (FireBrowse)PRICKLE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4007
GTEX Portal (Tissue expression)PRICKLE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43900   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43900  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43900
Splice isoforms : SwissVarO43900
PhosPhoSitePlusO43900
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    PET (PS51303)   
Domains : Interpro (EBI)PET_domain    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)    PET (PF06297)   
Domain families : Pfam (NCBI)pfam00412    pfam06297   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)PRICKLE3
DMDM Disease mutations4007
Blocks (Seattle)PRICKLE3
SuperfamilyO43900
Human Protein AtlasENSG00000012211
Peptide AtlasO43900
HPRD02120
IPIIPI00015129   IPI00647095   IPI01015252   IPI01015310   IPI00646505   IPI00645796   IPI00645169   
Protein Interaction databases
DIP (DOE-UCLA)O43900
IntAct (EBI)O43900
FunCoupENSG00000012211
BioGRIDPRICKLE3
STRING (EMBL)PRICKLE3
ZODIACPRICKLE3
Ontologies - Pathways
QuickGOO43900
Ontology : AmiGOprotein binding  cellular_component  biological_process  zinc ion binding  
Ontology : EGO-EBIprotein binding  cellular_component  biological_process  zinc ion binding  
NDEx NetworkPRICKLE3
Atlas of Cancer Signalling NetworkPRICKLE3
Wikipedia pathwaysPRICKLE3
Orthology - Evolution
OrthoDB4007
GeneTree (enSembl)ENSG00000012211
Phylogenetic Trees/Animal Genes : TreeFamPRICKLE3
HOVERGENO43900
HOGENOMO43900
Homologs : HomoloGenePRICKLE3
Homology/Alignments : Family Browser (UCSC)PRICKLE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRICKLE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRICKLE3
dbVarPRICKLE3
ClinVarPRICKLE3
1000_GenomesPRICKLE3 
Exome Variant ServerPRICKLE3
ExAC (Exome Aggregation Consortium)PRICKLE3 (select the gene name)
Genetic variants : HAPMAP4007
Genomic Variants (DGV)PRICKLE3 [DGVbeta]
DECIPHER (Syndromes)X:49031151-49041346  ENSG00000012211
CONAN: Copy Number AnalysisPRICKLE3 
Mutations
ICGC Data PortalPRICKLE3 
TCGA Data PortalPRICKLE3 
Broad Tumor PortalPRICKLE3
OASIS PortalPRICKLE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRICKLE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRICKLE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PRICKLE3
DgiDB (Drug Gene Interaction Database)PRICKLE3
DoCM (Curated mutations)PRICKLE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRICKLE3 (select a term)
intoGenPRICKLE3
Cancer3DPRICKLE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300111   
Orphanet
MedgenPRICKLE3
Genetic Testing Registry PRICKLE3
NextProtO43900 [Medical]
TSGene4007
GENETestsPRICKLE3
Huge Navigator PRICKLE3 [HugePedia]
snp3D : Map Gene to Disease4007
BioCentury BCIQPRICKLE3
ClinGenPRICKLE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4007
Chemical/Pharm GKB GenePA162400060
Clinical trialPRICKLE3
Miscellaneous
canSAR (ICR)PRICKLE3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRICKLE3
EVEXPRICKLE3
GoPubMedPRICKLE3
iHOPPRICKLE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:37 CET 2017

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