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PRIMA1 (proline rich membrane anchor 1)

Identity

Alias_symbol (synonym)PRIMA
Other alias
HGNC (Hugo) PRIMA1
LocusID (NCBI) 145270
Atlas_Id 55735
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 93718298 and ends at 93788420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRIMA1 (14q32.12) / NTPCR (1q42.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRIMA1   18319
Cards
Entrez_Gene (NCBI)PRIMA1  145270  proline rich membrane anchor 1
AliasesPRIMA
GeneCards (Weizmann)PRIMA1
Ensembl hg19 (Hinxton)ENSG00000175785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175785 [Gene_View]  chr14:93718298-93788420 [Contig_View]  PRIMA1 [Vega]
ICGC DataPortalENSG00000175785
TCGA cBioPortalPRIMA1
AceView (NCBI)PRIMA1
Genatlas (Paris)PRIMA1
WikiGenes145270
SOURCE (Princeton)PRIMA1
Genetics Home Reference (NIH)PRIMA1
Genomic and cartography
GoldenPath hg38 (UCSC)PRIMA1  -     chr14:93718298-93788420 -  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRIMA1  -     14q32.12   [Description]    (hg19-Feb_2009)
EnsemblPRIMA1 - 14q32.12 [CytoView hg19]  PRIMA1 - 14q32.12 [CytoView hg38]
Mapping of homologs : NCBIPRIMA1 [Mapview hg19]  PRIMA1 [Mapview hg38]
OMIM613851   
Gene and transcription
Genbank (Entrez)AY225516 AY225517 BC156510 BC172508 BU726715
RefSeq transcript (Entrez)NM_178004 NM_178013
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_009069 NT_187601
Consensus coding sequences : CCDS (NCBI)PRIMA1
Cluster EST : UnigeneHs.432401 [ NCBI ]
CGAP (NCI)Hs.432401
Alternative Splicing GalleryENSG00000175785
Gene ExpressionPRIMA1 [ NCBI-GEO ]   PRIMA1 [ EBI - ARRAY_EXPRESS ]   PRIMA1 [ SEEK ]   PRIMA1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRIMA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145270
GTEX Portal (Tissue expression)PRIMA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XR5
Splice isoforms : SwissVarQ86XR5
PhosPhoSitePlusQ86XR5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRIMA1
DMDM Disease mutations145270
Blocks (Seattle)PRIMA1
SuperfamilyQ86XR5
Human Protein AtlasENSG00000175785
Peptide AtlasQ86XR5
HPRD17907
IPIIPI00256233   IPI00329279   
Protein Interaction databases
DIP (DOE-UCLA)Q86XR5
IntAct (EBI)Q86XR5
FunCoupENSG00000175785
BioGRIDPRIMA1
STRING (EMBL)PRIMA1
ZODIACPRIMA1
Ontologies - Pathways
QuickGOQ86XR5
Ontology : AmiGOplasma membrane  integral component of membrane  cell junction  neurotransmitter catabolic process  synapse  
Ontology : EGO-EBIplasma membrane  integral component of membrane  cell junction  neurotransmitter catabolic process  synapse  
NDEx NetworkPRIMA1
Atlas of Cancer Signalling NetworkPRIMA1
Wikipedia pathwaysPRIMA1
Orthology - Evolution
OrthoDB145270
GeneTree (enSembl)ENSG00000175785
Phylogenetic Trees/Animal Genes : TreeFamPRIMA1
HOVERGENQ86XR5
HOGENOMQ86XR5
Homologs : HomoloGenePRIMA1
Homology/Alignments : Family Browser (UCSC)PRIMA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRIMA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRIMA1
dbVarPRIMA1
ClinVarPRIMA1
1000_GenomesPRIMA1 
Exome Variant ServerPRIMA1
ExAC (Exome Aggregation Consortium)PRIMA1 (select the gene name)
Genetic variants : HAPMAP145270
Genomic Variants (DGV)PRIMA1 [DGVbeta]
DECIPHERPRIMA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRIMA1 
Mutations
ICGC Data PortalPRIMA1 
TCGA Data PortalPRIMA1 
Broad Tumor PortalPRIMA1
OASIS PortalPRIMA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRIMA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRIMA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRIMA1
DgiDB (Drug Gene Interaction Database)PRIMA1
DoCM (Curated mutations)PRIMA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRIMA1 (select a term)
intoGenPRIMA1
Cancer3DPRIMA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613851   
Orphanet
MedgenPRIMA1
Genetic Testing Registry PRIMA1
NextProtQ86XR5 [Medical]
TSGene145270
GENETestsPRIMA1
Target ValidationPRIMA1
Huge Navigator PRIMA1 [HugePedia]
snp3D : Map Gene to Disease145270
BioCentury BCIQPRIMA1
ClinGenPRIMA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145270
Chemical/Pharm GKB GenePA38315
Clinical trialPRIMA1
Miscellaneous
canSAR (ICR)PRIMA1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRIMA1
EVEXPRIMA1
GoPubMedPRIMA1
iHOPPRIMA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:26:26 CEST 2017

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