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PRKCDBP (protein kinase C delta binding protein)

Identity

Alias_namesprotein kinase C
Alias_symbol (synonym)SRBC
HSRBC
MGC20400
cavin-3
CAVIN3
Other alias
HGNC (Hugo) PRKCDBP
LocusID (NCBI) 112464
Atlas_Id 41854
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6340176 and ends at 6341740 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRKCDBP (11p15.4) / MKRN2 (3p25.2)PRKCDBP (11p15.4) / NDUFS2 (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRKCDBP   9400
Cards
Entrez_Gene (NCBI)PRKCDBP  112464  protein kinase C delta binding protein
AliasesCAVIN3; HSRBC; SRBC; cavin-3
GeneCards (Weizmann)PRKCDBP
Ensembl hg19 (Hinxton)ENSG00000170955 [Gene_View]  chr11:6340176-6341740 [Contig_View]  PRKCDBP [Vega]
Ensembl hg38 (Hinxton)ENSG00000170955 [Gene_View]  chr11:6340176-6341740 [Contig_View]  PRKCDBP [Vega]
ICGC DataPortalENSG00000170955
TCGA cBioPortalPRKCDBP
AceView (NCBI)PRKCDBP
Genatlas (Paris)PRKCDBP
WikiGenes112464
SOURCE (Princeton)PRKCDBP
Genetics Home Reference (NIH)PRKCDBP
Genomic and cartography
GoldenPath hg19 (UCSC)PRKCDBP  -     chr11:6340176-6341740 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRKCDBP  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblPRKCDBP - 11p15.4 [CytoView hg19]  PRKCDBP - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIPRKCDBP [Mapview hg19]  PRKCDBP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF339881 BC011585 BC038387 BQ434360 DQ892300
RefSeq transcript (Entrez)NM_145040
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)PRKCDBP
Cluster EST : UnigeneHs.434044 [ NCBI ]
CGAP (NCI)Hs.434044
Alternative Splicing GalleryENSG00000170955
Gene ExpressionPRKCDBP [ NCBI-GEO ]   PRKCDBP [ EBI - ARRAY_EXPRESS ]   PRKCDBP [ SEEK ]   PRKCDBP [ MEM ]
Gene Expression Viewer (FireBrowse)PRKCDBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112464
GTEX Portal (Tissue expression)PRKCDBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969G5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969G5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969G5
Splice isoforms : SwissVarQ969G5
PhosPhoSitePlusQ969G5
Domains : Interpro (EBI)Cavin_fam   
Domain families : Pfam (Sanger)PTRF_SDPR (PF15237)   
Domain families : Pfam (NCBI)pfam15237   
Conserved Domain (NCBI)PRKCDBP
DMDM Disease mutations112464
Blocks (Seattle)PRKCDBP
SuperfamilyQ969G5
Human Protein AtlasENSG00000170955
Peptide AtlasQ969G5
HPRD17908
IPIIPI00056334   IPI00976461   
Protein Interaction databases
DIP (DOE-UCLA)Q969G5
IntAct (EBI)Q969G5
FunCoupENSG00000170955
BioGRIDPRKCDBP
STRING (EMBL)PRKCDBP
ZODIACPRKCDBP
Ontologies - Pathways
QuickGOQ969G5
Ontology : AmiGOprotein kinase C binding  protein binding  cytoplasm  cytoplasm  caveola  cortical actin cytoskeleton organization  circadian regulation of gene expression  protein complex  negative regulation of protein kinase B signaling  positive regulation of ERK1 and ERK2 cascade  negative regulation of fermentation  
Ontology : EGO-EBIprotein kinase C binding  protein binding  cytoplasm  cytoplasm  caveola  cortical actin cytoskeleton organization  circadian regulation of gene expression  protein complex  negative regulation of protein kinase B signaling  positive regulation of ERK1 and ERK2 cascade  negative regulation of fermentation  
NDEx NetworkPRKCDBP
Atlas of Cancer Signalling NetworkPRKCDBP
Wikipedia pathwaysPRKCDBP
Orthology - Evolution
OrthoDB112464
GeneTree (enSembl)ENSG00000170955
Phylogenetic Trees/Animal Genes : TreeFamPRKCDBP
HOVERGENQ969G5
HOGENOMQ969G5
Homologs : HomoloGenePRKCDBP
Homology/Alignments : Family Browser (UCSC)PRKCDBP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRKCDBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRKCDBP
dbVarPRKCDBP
ClinVarPRKCDBP
1000_GenomesPRKCDBP 
Exome Variant ServerPRKCDBP
ExAC (Exome Aggregation Consortium)PRKCDBP (select the gene name)
Genetic variants : HAPMAP112464
Genomic Variants (DGV)PRKCDBP [DGVbeta]
DECIPHER (Syndromes)11:6340176-6341740  ENSG00000170955
CONAN: Copy Number AnalysisPRKCDBP 
Mutations
ICGC Data PortalPRKCDBP 
TCGA Data PortalPRKCDBP 
Broad Tumor PortalPRKCDBP
OASIS PortalPRKCDBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRKCDBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRKCDBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRKCDBP
DgiDB (Drug Gene Interaction Database)PRKCDBP
DoCM (Curated mutations)PRKCDBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRKCDBP (select a term)
intoGenPRKCDBP
Cancer3DPRKCDBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRKCDBP
Genetic Testing Registry PRKCDBP
NextProtQ969G5 [Medical]
TSGene112464
GENETestsPRKCDBP
Huge Navigator PRKCDBP [HugePedia]
snp3D : Map Gene to Disease112464
BioCentury BCIQPRKCDBP
ClinGenPRKCDBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112464
Chemical/Pharm GKB GenePA33764
Clinical trialPRKCDBP
Miscellaneous
canSAR (ICR)PRKCDBP (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRKCDBP
EVEXPRKCDBP
GoPubMedPRKCDBP
iHOPPRKCDBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:40 CEST 2017

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