Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PRKCZ-AS1 (PRKCZ antisense RNA 1)

Identity

Alias_symbol (synonym)RP11-181G12.2
Other alias-
HGNC (Hugo) PRKCZ-AS1
LocusID (NCBI) 100506504
Atlas_Id 79443
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 2181794 and ends at 2183875 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRKCZ-AS1   40477
Cards
Entrez_Gene (NCBI)PRKCZ-AS1  100506504  PRKCZ antisense RNA 1
Aliases
GeneCards (Weizmann)PRKCZ-AS1
Ensembl hg19 (Hinxton)ENSG00000182873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182873 [Gene_View]  chr1:2181794-2183875 [Contig_View]  PRKCZ-AS1 [Vega]
ICGC DataPortalENSG00000182873
TCGA cBioPortalPRKCZ-AS1
AceView (NCBI)PRKCZ-AS1
Genatlas (Paris)PRKCZ-AS1
WikiGenes100506504
SOURCE (Princeton)PRKCZ-AS1
Genetics Home Reference (NIH)PRKCZ-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PRKCZ-AS1  -     chr1:2181794-2183875 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRKCZ-AS1  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblPRKCZ-AS1 - 1p36.33 [CytoView hg19]  PRKCZ-AS1 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIPRKCZ-AS1 [Mapview hg19]  PRKCZ-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001208 AK024190 BC002643
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRKCZ-AS1
Cluster EST : UnigeneHs.742283 [ NCBI ]
CGAP (NCI)Hs.742283
Alternative Splicing GalleryENSG00000182873
Gene ExpressionPRKCZ-AS1 [ NCBI-GEO ]   PRKCZ-AS1 [ EBI - ARRAY_EXPRESS ]   PRKCZ-AS1 [ SEEK ]   PRKCZ-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRKCZ-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506504
GTEX Portal (Tissue expression)PRKCZ-AS1
Human Protein AtlasENSG00000182873-PRKCZ-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRKCZ-AS1
DMDM Disease mutations100506504
Blocks (Seattle)PRKCZ-AS1
Human Protein Atlas [tissue]ENSG00000182873-PRKCZ-AS1 [tissue]
IPIIPI00018102   
Protein Interaction databases
FunCoupENSG00000182873
BioGRIDPRKCZ-AS1
STRING (EMBL)PRKCZ-AS1
ZODIACPRKCZ-AS1
Ontologies - Pathways
Huge Navigator PRKCZ-AS1 [HugePedia]
snp3D : Map Gene to Disease100506504
BioCentury BCIQPRKCZ-AS1
ClinGenPRKCZ-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506504
Clinical trialPRKCZ-AS1
Miscellaneous
canSAR (ICR)PRKCZ-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRKCZ-AS1
EVEXPRKCZ-AS1
GoPubMedPRKCZ-AS1
iHOPPRKCZ-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:28 CET 2017

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