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PRKX-AS1 (PRKX antisense RNA 1)

Identity

Alias_namesPRKX antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) PRKX-AS1
LocusID (NCBI) 100873944
Atlas_Id 72216
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 3659487 and ends at 3668190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRKX-AS1   40479
Cards
Entrez_Gene (NCBI)PRKX-AS1  100873944  PRKX antisense RNA 1
Aliases
GeneCards (Weizmann)PRKX-AS1
Ensembl hg19 (Hinxton)ENSG00000236188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236188 [Gene_View]  chrX:3659487-3668190 [Contig_View]  PRKX-AS1 [Vega]
ICGC DataPortalENSG00000236188
TCGA cBioPortalPRKX-AS1
AceView (NCBI)PRKX-AS1
Genatlas (Paris)PRKX-AS1
WikiGenes100873944
SOURCE (Princeton)PRKX-AS1
Genetics Home Reference (NIH)PRKX-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PRKX-AS1  -     chrX:3659487-3668190 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRKX-AS1  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblPRKX-AS1 - Xp22.33 [CytoView hg19]  PRKX-AS1 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIPRKX-AS1 [Mapview hg19]  PRKX-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW118832
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRKX-AS1
Alternative Splicing GalleryENSG00000236188
Gene ExpressionPRKX-AS1 [ NCBI-GEO ]   PRKX-AS1 [ EBI - ARRAY_EXPRESS ]   PRKX-AS1 [ SEEK ]   PRKX-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRKX-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873944
GTEX Portal (Tissue expression)PRKX-AS1
Human Protein AtlasENSG00000236188-PRKX-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRKX-AS1
DMDM Disease mutations100873944
Blocks (Seattle)PRKX-AS1
Human Protein Atlas [tissue]ENSG00000236188-PRKX-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000236188
BioGRIDPRKX-AS1
STRING (EMBL)PRKX-AS1
ZODIACPRKX-AS1
Ontologies - Pathways
Huge Navigator PRKX-AS1 [HugePedia]
snp3D : Map Gene to Disease100873944
BioCentury BCIQPRKX-AS1
ClinGenPRKX-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873944
Clinical trialPRKX-AS1
Miscellaneous
canSAR (ICR)PRKX-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRKX-AS1
EVEXPRKX-AS1
GoPubMedPRKX-AS1
iHOPPRKX-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:26 CET 2017

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