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PRKY (protein kinase, Y-linked, pseudogene)

Identity

Alias_namesprotein kinase
Alias_symbol (synonym)PRKYP
PRKXP3
Other alias
HGNC (Hugo) PRKY
LocusID (NCBI) 5616
Atlas_Id 43430
Location Yp11.2  [Link to chromosome band Yp11]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRKY   9444
Cards
Entrez_Gene (NCBI)PRKY  5616  protein kinase, Y-linked, pseudogene
AliasesPRKXP3; PRKYP
GeneCards (Weizmann)PRKY
Ensembl hg19 (Hinxton)ENSG00000099725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099725 [Gene_View]  - [Contig_View]  PRKY [Vega]
ICGC DataPortalENSG00000099725
TCGA cBioPortalPRKY
AceView (NCBI)PRKY
Genatlas (Paris)PRKY
WikiGenes5616
SOURCE (Princeton)PRKY
Genetics Home Reference (NIH)PRKY
Genomic and cartography
GoldenPath hg38 (UCSC)PRKY  -  
GoldenPath hg19 (UCSC)PRKY  -  
EnsemblPRKY - [CytoView hg19]  PRKY - [CytoView hg38]
Mapping of homologs : NCBIPRKY [Mapview hg19]  PRKY [Mapview hg38]
OMIM400008   
Gene and transcription
Genbank (Entrez)AA767129 AI929361 BC074851 BC074852 BG698237
RefSeq transcript (Entrez)NM_002760
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRKY
Cluster EST : UnigeneHs.584730 [ NCBI ]
CGAP (NCI)Hs.584730
Alternative Splicing GalleryENSG00000099725
Gene ExpressionPRKY [ NCBI-GEO ]   PRKY [ EBI - ARRAY_EXPRESS ]   PRKY [ SEEK ]   PRKY [ MEM ]
Gene Expression Viewer (FireBrowse)PRKY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5616
GTEX Portal (Tissue expression)PRKY
Human Protein AtlasENSG00000099725-PRKY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43930   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43930  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43930
Splice isoforms : SwissVarO43930
PhosPhoSitePlusO43930
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)PRKY
DMDM Disease mutations5616
Blocks (Seattle)PRKY
SuperfamilyO43930
Human Protein Atlas [tissue]ENSG00000099725-PRKY [tissue]
Peptide AtlasO43930
HPRD08949
IPIIPI00288889   
Protein Interaction databases
DIP (DOE-UCLA)O43930
IntAct (EBI)O43930
FunCoupENSG00000099725
BioGRIDPRKY
STRING (EMBL)PRKY
ZODIACPRKY
Ontologies - Pathways
QuickGOO43930
Ontology : AmiGOprotein serine/threonine kinase activity  ATP binding  protein phosphorylation  
Ontology : EGO-EBIprotein serine/threonine kinase activity  ATP binding  protein phosphorylation  
NDEx NetworkPRKY
Atlas of Cancer Signalling NetworkPRKY
Wikipedia pathwaysPRKY
Orthology - Evolution
OrthoDB5616
GeneTree (enSembl)ENSG00000099725
Phylogenetic Trees/Animal Genes : TreeFamPRKY
HOVERGENO43930
HOGENOMO43930
Homologs : HomoloGenePRKY
Homology/Alignments : Family Browser (UCSC)PRKY
Gene fusions - Rearrangements
Tumor Fusion PortalPRKY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRKY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRKY
dbVarPRKY
ClinVarPRKY
1000_GenomesPRKY 
Exome Variant ServerPRKY
ExAC (Exome Aggregation Consortium)ENSG00000099725
GNOMAD BrowserENSG00000099725
Genetic variants : HAPMAP5616
Genomic Variants (DGV)PRKY [DGVbeta]
DECIPHERPRKY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRKY 
Mutations
ICGC Data PortalPRKY 
TCGA Data PortalPRKY 
Broad Tumor PortalPRKY
OASIS PortalPRKY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRKY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRKY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRKY
DgiDB (Drug Gene Interaction Database)PRKY
DoCM (Curated mutations)PRKY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRKY (select a term)
intoGenPRKY
Cancer3DPRKY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400008   
Orphanet
DisGeNETPRKY
MedgenPRKY
Genetic Testing Registry PRKY
NextProtO43930 [Medical]
TSGene5616
GENETestsPRKY
Target ValidationPRKY
Huge Navigator PRKY [HugePedia]
snp3D : Map Gene to Disease5616
BioCentury BCIQPRKY
ClinGenPRKY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5616
Chemical/Pharm GKB GenePA33789
Clinical trialPRKY
Miscellaneous
canSAR (ICR)PRKY (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRKY
EVEXPRKY
GoPubMedPRKY
iHOPPRKY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:30:23 CET 2017

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