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PRM1 (protamine 1)

Identity

Alias_namesmember 1
Alias_symbol (synonym)CT94.1
Other aliasP1
HGNC (Hugo) PRM1
LocusID (NCBI) 5619
Atlas_Id 56123
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11374693 and ends at 11375192 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRM1   9447
Cards
Entrez_Gene (NCBI)PRM1  5619  protamine 1
AliasesCT94.1; P1
GeneCards (Weizmann)PRM1
Ensembl hg19 (Hinxton)ENSG00000175646 [Gene_View]  chr16:11374693-11375192 [Contig_View]  PRM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175646 [Gene_View]  chr16:11374693-11375192 [Contig_View]  PRM1 [Vega]
ICGC DataPortalENSG00000175646
TCGA cBioPortalPRM1
AceView (NCBI)PRM1
Genatlas (Paris)PRM1
WikiGenes5619
SOURCE (Princeton)PRM1
Genetics Home Reference (NIH)PRM1
Genomic and cartography
GoldenPath hg19 (UCSC)PRM1  -     chr16:11374693-11375192 -  16p13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRM1  -     16p13.13   [Description]    (hg38-Dec_2013)
EnsemblPRM1 - 16p13.13 [CytoView hg19]  PRM1 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBIPRM1 [Mapview hg19]  PRM1 [Mapview hg38]
OMIM182880   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_002761
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRM1
Cluster EST : UnigeneHs.60257 [ NCBI ]
CGAP (NCI)Hs.60257
Alternative Splicing GalleryENSG00000175646
Gene ExpressionPRM1 [ NCBI-GEO ]   PRM1 [ EBI - ARRAY_EXPRESS ]   PRM1 [ SEEK ]   PRM1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5619
GTEX Portal (Tissue expression)PRM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04553   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04553  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04553
Splice isoforms : SwissVarP04553
PhosPhoSitePlusP04553
Domaine pattern : Prosite (Expaxy)PROTAMINE_P1 (PS00048)   
Domains : Interpro (EBI)Protamine_P1   
Domain families : Pfam (Sanger)Protamine_P1 (PF00260)   
Domain families : Pfam (NCBI)pfam00260   
Conserved Domain (NCBI)PRM1
DMDM Disease mutations5619
Blocks (Seattle)PRM1
PDB (SRS)2AWR   
PDB (PDBSum)2AWR   
PDB (IMB)2AWR   
PDB (RSDB)2AWR   
Structural Biology KnowledgeBase2AWR   
SCOP (Structural Classification of Proteins)2AWR   
CATH (Classification of proteins structures)2AWR   
SuperfamilyP04553
Human Protein AtlasENSG00000175646
Peptide AtlasP04553
HPRD01688
IPIIPI00219614   
Protein Interaction databases
DIP (DOE-UCLA)P04553
IntAct (EBI)P04553
FunCoupENSG00000175646
BioGRIDPRM1
STRING (EMBL)PRM1
ZODIACPRM1
Ontologies - Pathways
QuickGOP04553
Ontology : AmiGOnucleosome  DNA binding  nucleoplasm  DNA packaging  nucleus organization  multicellular organism development  spermatogenesis  spermatid development  chromosome condensation  
Ontology : EGO-EBInucleosome  DNA binding  nucleoplasm  DNA packaging  nucleus organization  multicellular organism development  spermatogenesis  spermatid development  chromosome condensation  
NDEx NetworkPRM1
Atlas of Cancer Signalling NetworkPRM1
Wikipedia pathwaysPRM1
Orthology - Evolution
OrthoDB5619
GeneTree (enSembl)ENSG00000175646
Phylogenetic Trees/Animal Genes : TreeFamPRM1
HOVERGENP04553
HOGENOMP04553
Homologs : HomoloGenePRM1
Homology/Alignments : Family Browser (UCSC)PRM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRM1
dbVarPRM1
ClinVarPRM1
1000_GenomesPRM1 
Exome Variant ServerPRM1
ExAC (Exome Aggregation Consortium)PRM1 (select the gene name)
Genetic variants : HAPMAP5619
Genomic Variants (DGV)PRM1 [DGVbeta]
DECIPHER (Syndromes)16:11374693-11375192  ENSG00000175646
CONAN: Copy Number AnalysisPRM1 
Mutations
ICGC Data PortalPRM1 
TCGA Data PortalPRM1 
Broad Tumor PortalPRM1
OASIS PortalPRM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRM1
DgiDB (Drug Gene Interaction Database)PRM1
DoCM (Curated mutations)PRM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRM1 (select a term)
intoGenPRM1
Cancer3DPRM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182880   
Orphanet
MedgenPRM1
Genetic Testing Registry PRM1
NextProtP04553 [Medical]
TSGene5619
GENETestsPRM1
Huge Navigator PRM1 [HugePedia]
snp3D : Map Gene to Disease5619
BioCentury BCIQPRM1
ClinGenPRM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5619
Chemical/Pharm GKB GenePA33792
Clinical trialPRM1
Miscellaneous
canSAR (ICR)PRM1 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRM1
EVEXPRM1
GoPubMedPRM1
iHOPPRM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:43 CEST 2017

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