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PRM2 (protamine 2)

Identity

Alias (NCBI)CT94.2
HGNC (Hugo) PRM2
HGNC Alias symbCT94.2
HGNC Alias namecancer/testis antigen family 94, member 2
LocusID (NCBI) 5620
Atlas_Id 47641
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11275639 and ends at 11276480 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRM2   9448
Cards
Entrez_Gene (NCBI)PRM2    protamine 2
AliasesCT94.2
GeneCards (Weizmann)PRM2
Ensembl hg19 (Hinxton)ENSG00000122304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122304 [Gene_View]  ENSG00000122304 [Sequence]  chr16:11275639-11276480 [Contig_View]  PRM2 [Vega]
ICGC DataPortalENSG00000122304
TCGA cBioPortalPRM2
AceView (NCBI)PRM2
Genatlas (Paris)PRM2
SOURCE (Princeton)PRM2
Genetics Home Reference (NIH)PRM2
Genomic and cartography
GoldenPath hg38 (UCSC)PRM2  -     chr16:11275639-11276480 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRM2  -     16p13.13   [Description]    (hg19-Feb_2009)
GoldenPathPRM2 - 16p13.13 [CytoView hg19]  PRM2 - 16p13.13 [CytoView hg38]
ImmunoBaseENSG00000122304
genome Data Viewer NCBIPRM2 [Mapview hg19]  
OMIM182890   
Gene and transcription
Genbank (Entrez)AK130957 AK131573 AK292447 AK307320 AK311798
RefSeq transcript (Entrez)NM_001286356 NM_001286357 NM_001286358 NM_001286359 NM_002762
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRM2
Alternative Splicing GalleryENSG00000122304
Gene ExpressionPRM2 [ NCBI-GEO ]   PRM2 [ EBI - ARRAY_EXPRESS ]   PRM2 [ SEEK ]   PRM2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRM2 [ Firebrowse - Broad ]
GenevisibleExpression of PRM2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5620
GTEX Portal (Tissue expression)PRM2
Human Protein AtlasENSG00000122304-PRM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04554   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04554  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04554
Splice isoforms : SwissVarP04554
PhosPhoSitePlusP04554
Domains : Interpro (EBI)PRM2   
Domain families : Pfam (Sanger)Protamine_P2 (PF00841)   
Domain families : Pfam (NCBI)pfam00841   
Conserved Domain (NCBI)PRM2
Blocks (Seattle)PRM2
PDB (RSDB)2AWR   
PDB Europe2AWR   
PDB (PDBSum)2AWR   
PDB (IMB)2AWR   
Structural Biology KnowledgeBase2AWR   
SCOP (Structural Classification of Proteins)2AWR   
CATH (Classification of proteins structures)2AWR   
SuperfamilyP04554
Human Protein Atlas [tissue]ENSG00000122304-PRM2 [tissue]
Peptide AtlasP04554
HPRD01691
IPIIPI00024683   IPI00871377   IPI00982781   
Protein Interaction databases
DIP (DOE-UCLA)P04554
IntAct (EBI)P04554
BioGRIDPRM2
STRING (EMBL)PRM2
ZODIACPRM2
Ontologies - Pathways
QuickGOP04554
Ontology : AmiGOnucleosome  DNA binding  protein binding  nucleus  nucleus  nucleoplasm  DNA packaging  nucleus organization  multicellular organism development  spermatogenesis  spermatid development  zinc ion binding  chromosome condensation  cadmium ion binding  
Ontology : EGO-EBInucleosome  DNA binding  protein binding  nucleus  nucleus  nucleoplasm  DNA packaging  nucleus organization  multicellular organism development  spermatogenesis  spermatid development  zinc ion binding  chromosome condensation  cadmium ion binding  
NDEx NetworkPRM2
Atlas of Cancer Signalling NetworkPRM2
Wikipedia pathwaysPRM2
Orthology - Evolution
OrthoDB5620
GeneTree (enSembl)ENSG00000122304
Phylogenetic Trees/Animal Genes : TreeFamPRM2
HOGENOMP04554
Homologs : HomoloGenePRM2
Homology/Alignments : Family Browser (UCSC)PRM2
Gene fusions - Rearrangements
Fusion : QuiverPRM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRM2 [hg38]
dbVarPRM2
ClinVarPRM2
MonarchPRM2
1000_GenomesPRM2 
Exome Variant ServerPRM2
GNOMAD BrowserENSG00000122304
Varsome BrowserPRM2
Genomic Variants (DGV)PRM2 [DGVbeta]
DECIPHERPRM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRM2 
Mutations
ICGC Data PortalPRM2 
TCGA Data PortalPRM2 
Broad Tumor PortalPRM2
OASIS PortalPRM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRM2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPRM2
Mutations and Diseases : HGMDPRM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRM2
DgiDB (Drug Gene Interaction Database)PRM2
DoCM (Curated mutations)PRM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRM2 (select a term)
intoGenPRM2
Cancer3DPRM2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182890   
Orphanet
DisGeNETPRM2
MedgenPRM2
Genetic Testing Registry PRM2
NextProtP04554 [Medical]
GENETestsPRM2
Target ValidationPRM2
Huge Navigator PRM2 [HugePedia]
ClinGenPRM2
Clinical trials, drugs, therapy
MyCancerGenomePRM2
Protein Interactions : CTD
Pharm GKB GenePA33793
PharosP04554
Clinical trialPRM2
Miscellaneous
canSAR (ICR)PRM2 (select the gene name)
HarmonizomePRM2
DataMed IndexPRM2
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPRM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:41:07 CET 2021
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