Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRM2 (protamine 2)

Identity

Other namesCT94.2
HGNC (Hugo) PRM2
LocusID (NCBI) 5620
Location 16p13.13
Location_base_pair Starts at 11369493 and ends at 11370337 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRM2   9448
Cards
Entrez_Gene (NCBI)PRM2  5620  protamine 2
GeneCards (Weizmann)PRM2
Ensembl (Hinxton)ENSG00000122304 [Gene_View]  chr16:11369493-11370337 [Contig_View]  PRM2 [Vega]
AceView (NCBI)PRM2
Genatlas (Paris)PRM2
WikiGenes5620
SOURCE (Princeton)NM_001286356 NM_001286357 NM_001286358 NM_001286359 NM_002762
Genomic and cartography
GoldenPath (UCSC)PRM2  -  16p13.13   chr16:11369493-11370337 -  16p13.13   [Description]    (hg19-Feb_2009)
EnsemblPRM2 - 16p13.13 [CytoView]
Mapping of homologs : NCBIPRM2 [Mapview]
OMIM182890   
Gene and transcription
Genbank (Entrez)AK130957 AK131573 AK292447 AK307320 AK311798
RefSeq transcript (Entrez)NM_001286356 NM_001286357 NM_001286358 NM_001286359 NM_002762
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838343 NW_004929400
Consensus coding sequences : CCDS (NCBI)PRM2
Cluster EST : UnigeneHs.2324 [ NCBI ]
CGAP (NCI)Hs.2324
Alternative Splicing : Fast-db (Paris)GSHG0011628
Alternative Splicing GalleryENSG00000122304
Gene ExpressionPRM2 [ NCBI-GEO ]     PRM2 [ SEEK ]   PRM2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04554 (Uniprot)
NextProtP04554  [Medical]
With graphics : InterProP04554
Splice isoforms : SwissVarP04554 (Swissvar)
Domains : Interpro (EBI)Protamine_P2   
Related proteins : CluSTrP04554
Domain families : Pfam (Sanger)Protamine_P2 (PF00841)   
Domain families : Pfam (NCBI)pfam00841   
DMDM Disease mutations5620
Blocks (Seattle)P04554
PDB (SRS)2AWR   
PDB (PDBSum)2AWR   
PDB (IMB)2AWR   
PDB (RSDB)2AWR   
Human Protein AtlasENSG00000122304
Peptide AtlasP04554
HPRD01691
IPIIPI00024683   IPI00871377   IPI00982781   
Protein Interaction databases
DIP (DOE-UCLA)P04554
IntAct (EBI)P04554
FunCoupENSG00000122304
BioGRIDPRM2
InParanoidP04554
Interologous Interaction database P04554
IntegromeDBPRM2
STRING (EMBL)PRM2
Ontologies - Pathways
Ontology : AmiGOnucleosome  DNA binding  nucleoplasm  DNA packaging  multicellular organismal development  spermatogenesis  cell differentiation  chromosome condensation  
Ontology : EGO-EBInucleosome  DNA binding  nucleoplasm  DNA packaging  multicellular organismal development  spermatogenesis  cell differentiation  chromosome condensation  
REACTOMEPRM2
Protein Interaction DatabasePRM2
Wikipedia pathwaysPRM2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PRM2
SNP (GeneSNP Utah)PRM2
SNP : HGBasePRM2
Genetic variants : HAPMAPPRM2
1000_GenomesPRM2 
ICGC programENSG00000122304 
Somatic Mutations in Cancer : COSMICPRM2 
CONAN: Copy Number AnalysisPRM2 
Mutations and Diseases : HGMDPRM2
OMIM182890   
GENETestsPRM2
Disease Genetic AssociationPRM2
Huge Navigator PRM2 [HugePedia]  PRM2 [HugeCancerGEM]
Genomic VariantsPRM2  PRM2 [DGVbeta]
Exome VariantPRM2
dbVarPRM2
ClinVarPRM2
snp3D : Map Gene to Disease5620
General knowledge
Homologs : HomoloGenePRM2
Homology/Alignments : Family Browser (UCSC)PRM2
Phylogenetic Trees/Animal Genes : TreeFamPRM2
Chemical/Protein Interactions : CTD5620
Chemical/Pharm GKB GenePA33793
Clinical trialPRM2
Cancer Resource (Charite)ENSG00000122304
Other databases
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
CoreMinePRM2
iHOPPRM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Mar 31 09:25:38 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.