Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRM2 (protamine 2)

Identity

Other namesCT94.2
HGNC (Hugo) PRM2
LocusID (NCBI) 5620
Atlas_Id 47641
Location 16p13.13
Location_base_pair Starts at 11369493 and ends at 11370337 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRM2   9448
Cards
Entrez_Gene (NCBI)PRM2  5620  protamine 2
GeneCards (Weizmann)PRM2
Ensembl hg19 (Hinxton)ENSG00000122304 [Gene_View]  chr16:11369493-11370337 [Contig_View]  PRM2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122304 [Gene_View]  chr16:11369493-11370337 [Contig_View]  PRM2 [Vega]
ICGC DataPortalENSG00000122304
TCGA cBioPortalPRM2
AceView (NCBI)PRM2
Genatlas (Paris)PRM2
WikiGenes5620
SOURCE (Princeton)PRM2
Genomic and cartography
GoldenPath hg19 (UCSC)PRM2  -     chr16:11369493-11370337 -  16p13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRM2  -     16p13.13   [Description]    (hg38-Dec_2013)
EnsemblPRM2 - 16p13.13 [CytoView hg19]  PRM2 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBIPRM2 [Mapview hg19]  PRM2 [Mapview hg38]
OMIM182890   
Gene and transcription
Genbank (Entrez)AK130957 AK131573 AK292447 AK307320 AK311798
RefSeq transcript (Entrez)NM_001286356 NM_001286357 NM_001286358 NM_001286359 NM_002762
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)PRM2
Cluster EST : UnigeneHs.2324 [ NCBI ]
CGAP (NCI)Hs.2324
Alternative Splicing : Fast-db (Paris)GSHG0011628
Alternative Splicing GalleryENSG00000122304
Gene ExpressionPRM2 [ NCBI-GEO ]     PRM2 [ SEEK ]   PRM2 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)5620
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04554 (Uniprot)
NextProtP04554  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04554
Splice isoforms : SwissVarP04554 (Swissvar)
PhosPhoSitePlusP04554
Domains : Interpro (EBI)PRM2   
Domain families : Pfam (Sanger)Protamine_P2 (PF00841)   
Domain families : Pfam (NCBI)pfam00841   
DMDM Disease mutations5620
Blocks (Seattle)PRM2
PDB (SRS)2AWR   
PDB (PDBSum)2AWR   
PDB (IMB)2AWR   
PDB (RSDB)2AWR   
Structural Biology KnowledgeBase2AWR   
SCOP (Structural Classification of Proteins)2AWR   
CATH (Classification of proteins structures)2AWR   
Human Protein AtlasENSG00000122304
Peptide AtlasP04554
HPRD01691
IPIIPI00024683   IPI00871377   IPI00982781   
Protein Interaction databases
DIP (DOE-UCLA)P04554
IntAct (EBI)P04554
FunCoupENSG00000122304
BioGRIDPRM2
IntegromeDBPRM2
STRING (EMBL)PRM2
ZODIACPRM2
Ontologies - Pathways
QuickGOP04554
Ontology : AmiGOnucleosome  DNA binding  nucleus  nucleoplasm  DNA packaging  nucleus organization  multicellular organismal development  spermatogenesis  spermatid development  chromosome condensation  
Ontology : EGO-EBInucleosome  DNA binding  nucleus  nucleoplasm  DNA packaging  nucleus organization  multicellular organismal development  spermatogenesis  spermatid development  chromosome condensation  
Protein Interaction DatabasePRM2
Atlas of Cancer Signalling NetworkPRM2
Wikipedia pathwaysPRM2
Orthology - Evolution
OrthoDB5620
GeneTree (enSembl)ENSG00000122304
Phylogenetic Trees/Animal Genes : TreeFamPRM2
Homologs : HomoloGenePRM2
Homology/Alignments : Family Browser (UCSC)PRM2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerPRM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRM2
dbVarPRM2
ClinVarPRM2
1000_GenomesPRM2 
Exome Variant ServerPRM2
Exome Aggregation Consortium (ExAC)ENSG00000122304
SNP (GeneSNP Utah)PRM2
SNP : HGBasePRM2
Genetic variants : HAPMAPPRM2
Genomic Variants (DGV)PRM2 [DGVbeta]
Mutations
ICGC Data PortalPRM2 
TCGA Data PortalPRM2 
Tumor PortalPRM2
TCGA Copy Number PortalPRM2
Somatic Mutations in Cancer : COSMICPRM2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRM2
DgiDB (Drug Gene Interaction Database)PRM2
DoCM (Curated mutations)PRM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRM2 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:11369493-11370337
CONAN: Copy Number AnalysisPRM2 
Mutations and Diseases : HGMDPRM2
OMIM182890   
MedgenPRM2
NextProtP04554 [Medical]
TSGene5620
GENETestsPRM2
Huge Navigator PRM2 [HugePedia]  PRM2 [HugeCancerGEM]
snp3D : Map Gene to Disease5620
BioCentury BCIQPRM2
General knowledge
Chemical/Protein Interactions : CTD5620
Chemical/Pharm GKB GenePA33793
Clinical trialPRM2
Other databases
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRM2
GoPubMedPRM2
iHOPPRM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jan 16 19:18:56 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.