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PRM3 (protamine 3)

Identity

Other alias-
HGNC (Hugo) PRM3
LocusID (NCBI) 58531
Atlas_Id 72219
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11273199 and ends at 11273595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRM3   13732
Cards
Entrez_Gene (NCBI)PRM3  58531  protamine 3
Aliases
GeneCards (Weizmann)PRM3
Ensembl hg19 (Hinxton)ENSG00000178257 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178257 [Gene_View]  chr16:11273199-11273595 [Contig_View]  PRM3 [Vega]
ICGC DataPortalENSG00000178257
TCGA cBioPortalPRM3
AceView (NCBI)PRM3
Genatlas (Paris)PRM3
WikiGenes58531
SOURCE (Princeton)PRM3
Genetics Home Reference (NIH)PRM3
Genomic and cartography
GoldenPath hg38 (UCSC)PRM3  -     chr16:11273199-11273595 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRM3  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblPRM3 - 16p13.13 [CytoView hg19]  PRM3 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBIPRM3 [Mapview hg19]  PRM3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW666005 BC172319
RefSeq transcript (Entrez)NM_021247
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRM3
Cluster EST : UnigeneHs.259636 [ NCBI ]
CGAP (NCI)Hs.259636
Alternative Splicing GalleryENSG00000178257
Gene ExpressionPRM3 [ NCBI-GEO ]   PRM3 [ EBI - ARRAY_EXPRESS ]   PRM3 [ SEEK ]   PRM3 [ MEM ]
Gene Expression Viewer (FireBrowse)PRM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58531
GTEX Portal (Tissue expression)PRM3
Human Protein AtlasENSG00000178257-PRM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NNZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NNZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NNZ6
Splice isoforms : SwissVarQ9NNZ6
PhosPhoSitePlusQ9NNZ6
Domains : Interpro (EBI)PRMP3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRM3
DMDM Disease mutations58531
Blocks (Seattle)PRM3
SuperfamilyQ9NNZ6
Human Protein Atlas [tissue]ENSG00000178257-PRM3 [tissue]
Peptide AtlasQ9NNZ6
HPRD17909
IPIIPI00009748   
Protein Interaction databases
DIP (DOE-UCLA)Q9NNZ6
IntAct (EBI)Q9NNZ6
FunCoupENSG00000178257
BioGRIDPRM3
STRING (EMBL)PRM3
ZODIACPRM3
Ontologies - Pathways
QuickGOQ9NNZ6
Ontology : AmiGOnucleosome  molecular_function  DNA binding  cellular_component  nucleus  cytoplasm  multicellular organism development  spermatogenesis  biological_process  cell differentiation  chromosome condensation  flagellated sperm motility  
Ontology : EGO-EBInucleosome  molecular_function  DNA binding  cellular_component  nucleus  cytoplasm  multicellular organism development  spermatogenesis  biological_process  cell differentiation  chromosome condensation  flagellated sperm motility  
NDEx NetworkPRM3
Atlas of Cancer Signalling NetworkPRM3
Wikipedia pathwaysPRM3
Orthology - Evolution
OrthoDB58531
GeneTree (enSembl)ENSG00000178257
Phylogenetic Trees/Animal Genes : TreeFamPRM3
HOVERGENQ9NNZ6
HOGENOMQ9NNZ6
Homologs : HomoloGenePRM3
Homology/Alignments : Family Browser (UCSC)PRM3
Gene fusions - Rearrangements
Tumor Fusion PortalPRM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRM3
dbVarPRM3
ClinVarPRM3
1000_GenomesPRM3 
Exome Variant ServerPRM3
ExAC (Exome Aggregation Consortium)ENSG00000178257
GNOMAD BrowserENSG00000178257
Genetic variants : HAPMAP58531
Genomic Variants (DGV)PRM3 [DGVbeta]
DECIPHERPRM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRM3 
Mutations
ICGC Data PortalPRM3 
TCGA Data PortalPRM3 
Broad Tumor PortalPRM3
OASIS PortalPRM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRM3
DgiDB (Drug Gene Interaction Database)PRM3
DoCM (Curated mutations)PRM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRM3 (select a term)
intoGenPRM3
Cancer3DPRM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRM3
MedgenPRM3
Genetic Testing Registry PRM3
NextProtQ9NNZ6 [Medical]
TSGene58531
GENETestsPRM3
Target ValidationPRM3
Huge Navigator PRM3 [HugePedia]
snp3D : Map Gene to Disease58531
BioCentury BCIQPRM3
ClinGenPRM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58531
Chemical/Pharm GKB GenePA33794
Clinical trialPRM3
Miscellaneous
canSAR (ICR)PRM3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRM3
EVEXPRM3
GoPubMedPRM3
iHOPPRM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:10 CET 2017

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