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PRMT7 (protein arginine methyltransferase 7)

Identity

Alias_symbol (synonym)FLJ10640
KIAA1933
Other aliasSBIDDS
HGNC (Hugo) PRMT7
LocusID (NCBI) 54496
Atlas_Id 53107
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 68310974 and ends at 68357266 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRMT7 (16q22.1) / NFATC3 (16q22.1)PRMT7 (16q22.1) / QKI (6q26)TCTEX1D2 (3q29) / PRMT7 (16q22.1)
PRMT7 16q22.1 / NFATC3 16q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRMT7   25557
Cards
Entrez_Gene (NCBI)PRMT7  54496  protein arginine methyltransferase 7
AliasesSBIDDS
GeneCards (Weizmann)PRMT7
Ensembl hg19 (Hinxton)ENSG00000132600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132600 [Gene_View]  chr16:68310974-68357266 [Contig_View]  PRMT7 [Vega]
ICGC DataPortalENSG00000132600
TCGA cBioPortalPRMT7
AceView (NCBI)PRMT7
Genatlas (Paris)PRMT7
WikiGenes54496
SOURCE (Princeton)PRMT7
Genetics Home Reference (NIH)PRMT7
Genomic and cartography
GoldenPath hg38 (UCSC)PRMT7  -     chr16:68310974-68357266 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRMT7  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblPRMT7 - 16q22.1 [CytoView hg19]  PRMT7 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIPRMT7 [Mapview hg19]  PRMT7 [Mapview hg38]
OMIM610087   617157   
Gene and transcription
Genbank (Entrez)AB067520 AK001502 AK022739 AK056647 AK097175
RefSeq transcript (Entrez)NM_001184824 NM_001290018 NM_019023
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRMT7
Cluster EST : UnigeneHs.653193 [ NCBI ]
CGAP (NCI)Hs.653193
Alternative Splicing GalleryENSG00000132600
Gene ExpressionPRMT7 [ NCBI-GEO ]   PRMT7 [ EBI - ARRAY_EXPRESS ]   PRMT7 [ SEEK ]   PRMT7 [ MEM ]
Gene Expression Viewer (FireBrowse)PRMT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54496
GTEX Portal (Tissue expression)PRMT7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVM4
Splice isoforms : SwissVarQ9NVM4
PhosPhoSitePlusQ9NVM4
Domaine pattern : Prosite (Expaxy)SAM_MT_PRMT (PS51678)   
Domains : Interpro (EBI)Arg_MeTrfase    MeTrfase_PRMT7    SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRMT7
DMDM Disease mutations54496
Blocks (Seattle)PRMT7
SuperfamilyQ9NVM4
Human Protein AtlasENSG00000132600
Peptide AtlasQ9NVM4
HPRD15174
IPIIPI00004567   IPI00219090   IPI00909654   IPI00643634   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVM4
IntAct (EBI)Q9NVM4
FunCoupENSG00000132600
BioGRIDPRMT7
STRING (EMBL)PRMT7
ZODIACPRMT7
Ontologies - Pathways
QuickGOQ9NVM4
Ontology : AmiGOspliceosomal snRNP assembly  fibrillar center  nucleus  nucleoplasm  nucleoplasm  cytosol  regulation of gene expression by genetic imprinting  transcription, DNA-templated  regulation of transcription, DNA-templated  histone-arginine N-methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  protein-arginine N-methyltransferase activity  [myelin basic protein]-arginine N-methyltransferase activity  histone methylation  peptidyl-arginine methylation  peptidyl-arginine methylation  peptidyl-arginine methylation, to symmetrical-dimethyl arginine  cell differentiation  histone arginine methylation  protein-arginine omega-N monomethyltransferase activity  protein-arginine omega-N symmetric methyltransferase activity  protein-arginine omega-N symmetric methyltransferase activity  histone binding  ribonucleoprotein complex binding  DNA methylation involved in gamete generation  regulation of protein binding  histone H4-R3 methylation  histone methyltransferase activity (H4-R3 specific)  
Ontology : EGO-EBIspliceosomal snRNP assembly  fibrillar center  nucleus  nucleoplasm  nucleoplasm  cytosol  regulation of gene expression by genetic imprinting  transcription, DNA-templated  regulation of transcription, DNA-templated  histone-arginine N-methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  protein-arginine N-methyltransferase activity  [myelin basic protein]-arginine N-methyltransferase activity  histone methylation  peptidyl-arginine methylation  peptidyl-arginine methylation  peptidyl-arginine methylation, to symmetrical-dimethyl arginine  cell differentiation  histone arginine methylation  protein-arginine omega-N monomethyltransferase activity  protein-arginine omega-N symmetric methyltransferase activity  protein-arginine omega-N symmetric methyltransferase activity  histone binding  ribonucleoprotein complex binding  DNA methylation involved in gamete generation  regulation of protein binding  histone H4-R3 methylation  histone methyltransferase activity (H4-R3 specific)  
NDEx NetworkPRMT7
Atlas of Cancer Signalling NetworkPRMT7
Wikipedia pathwaysPRMT7
Orthology - Evolution
OrthoDB54496
GeneTree (enSembl)ENSG00000132600
Phylogenetic Trees/Animal Genes : TreeFamPRMT7
HOVERGENQ9NVM4
HOGENOMQ9NVM4
Homologs : HomoloGenePRMT7
Homology/Alignments : Family Browser (UCSC)PRMT7
Gene fusions - Rearrangements
Fusion : MitelmanPRMT7/NFATC3 [16q22.1/16q22.1]  
Fusion: TCGAPRMT7 16q22.1 NFATC3 16q22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRMT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRMT7
dbVarPRMT7
ClinVarPRMT7
1000_GenomesPRMT7 
Exome Variant ServerPRMT7
ExAC (Exome Aggregation Consortium)PRMT7 (select the gene name)
Genetic variants : HAPMAP54496
Genomic Variants (DGV)PRMT7 [DGVbeta]
DECIPHERPRMT7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRMT7 
Mutations
ICGC Data PortalPRMT7 
TCGA Data PortalPRMT7 
Broad Tumor PortalPRMT7
OASIS PortalPRMT7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRMT7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRMT7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRMT7
DgiDB (Drug Gene Interaction Database)PRMT7
DoCM (Curated mutations)PRMT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRMT7 (select a term)
intoGenPRMT7
Cancer3DPRMT7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610087    617157   
Orphanet
MedgenPRMT7
Genetic Testing Registry PRMT7
NextProtQ9NVM4 [Medical]
TSGene54496
GENETestsPRMT7
Target ValidationPRMT7
Huge Navigator PRMT7 [HugePedia]
snp3D : Map Gene to Disease54496
BioCentury BCIQPRMT7
ClinGenPRMT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54496
Chemical/Pharm GKB GenePA143485581
Clinical trialPRMT7
Miscellaneous
canSAR (ICR)PRMT7 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRMT7
EVEXPRMT7
GoPubMedPRMT7
iHOPPRMT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:51:11 CEST 2017

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