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PRMT9 (protein arginine methyltransferase 9)

Identity

Alias_namesPRMT10
protein arginine methyltransferase 10 (putative)
Alias_symbol (synonym)FLJ46629
Other alias
HGNC (Hugo) PRMT9
LocusID (NCBI) 90826
Atlas_Id 55771
Location 4q31.23  [Link to chromosome band 4q31]
Location_base_pair Starts at 147637785 and ends at 147684230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRMT9 (4q31.23) / LRBA (4q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRMT9   25099
Cards
Entrez_Gene (NCBI)PRMT9  90826  protein arginine methyltransferase 9
AliasesPRMT10
GeneCards (Weizmann)PRMT9
Ensembl hg19 (Hinxton)ENSG00000164169 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164169 [Gene_View]  chr4:147637785-147684230 [Contig_View]  PRMT9 [Vega]
ICGC DataPortalENSG00000164169
TCGA cBioPortalPRMT9
AceView (NCBI)PRMT9
Genatlas (Paris)PRMT9
WikiGenes90826
SOURCE (Princeton)PRMT9
Genetics Home Reference (NIH)PRMT9
Genomic and cartography
GoldenPath hg38 (UCSC)PRMT9  -     chr4:147637785-147684230 -  4q31.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRMT9  -     4q31.23   [Description]    (hg19-Feb_2009)
EnsemblPRMT9 - 4q31.23 [CytoView hg19]  PRMT9 - 4q31.23 [CytoView hg38]
Mapping of homologs : NCBIPRMT9 [Mapview hg19]  PRMT9 [Mapview hg38]
OMIM616125   
Gene and transcription
Genbank (Entrez)AK096703 AK128483 AK292904 AL137452 BC004337
RefSeq transcript (Entrez)NM_001304458 NM_001350141 NM_001350142 NM_001350143 NM_001350144 NM_138364
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRMT9
Cluster EST : UnigeneHs.591692 [ NCBI ]
CGAP (NCI)Hs.591692
Alternative Splicing GalleryENSG00000164169
Gene ExpressionPRMT9 [ NCBI-GEO ]   PRMT9 [ EBI - ARRAY_EXPRESS ]   PRMT9 [ SEEK ]   PRMT9 [ MEM ]
Gene Expression Viewer (FireBrowse)PRMT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90826
GTEX Portal (Tissue expression)PRMT9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2P2
Splice isoforms : SwissVarQ6P2P2
PhosPhoSitePlusQ6P2P2
Domaine pattern : Prosite (Expaxy)SAM_MT_PRMT (PS51678)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Arg_MeTrfase    SAM-dependent_MTases    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRMT9
DMDM Disease mutations90826
Blocks (Seattle)PRMT9
SuperfamilyQ6P2P2
Human Protein AtlasENSG00000164169
Peptide AtlasQ6P2P2
HPRD14280
IPIIPI00395476   IPI00887756   IPI00967661   
Protein Interaction databases
DIP (DOE-UCLA)Q6P2P2
IntAct (EBI)Q6P2P2
FunCoupENSG00000164169
BioGRIDPRMT9
STRING (EMBL)PRMT9
ZODIACPRMT9
Ontologies - Pathways
QuickGOQ6P2P2
Ontology : AmiGOprotein methylation  methyltransferase activity  
Ontology : EGO-EBIprotein methylation  methyltransferase activity  
NDEx NetworkPRMT9
Atlas of Cancer Signalling NetworkPRMT9
Wikipedia pathwaysPRMT9
Orthology - Evolution
OrthoDB90826
GeneTree (enSembl)ENSG00000164169
Phylogenetic Trees/Animal Genes : TreeFamPRMT9
HOVERGENQ6P2P2
HOGENOMQ6P2P2
Homologs : HomoloGenePRMT9
Homology/Alignments : Family Browser (UCSC)PRMT9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRMT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRMT9
dbVarPRMT9
ClinVarPRMT9
1000_GenomesPRMT9 
Exome Variant ServerPRMT9
ExAC (Exome Aggregation Consortium)PRMT9 (select the gene name)
Genetic variants : HAPMAP90826
Genomic Variants (DGV)PRMT9 [DGVbeta]
DECIPHERPRMT9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRMT9 
Mutations
ICGC Data PortalPRMT9 
TCGA Data PortalPRMT9 
Broad Tumor PortalPRMT9
OASIS PortalPRMT9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRMT9
BioMutasearch PRMT9
DgiDB (Drug Gene Interaction Database)PRMT9
DoCM (Curated mutations)PRMT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRMT9 (select a term)
intoGenPRMT9
Cancer3DPRMT9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616125   
Orphanet
MedgenPRMT9
Genetic Testing Registry PRMT9
NextProtQ6P2P2 [Medical]
TSGene90826
GENETestsPRMT9
Target ValidationPRMT9
Huge Navigator PRMT9 [HugePedia]
snp3D : Map Gene to Disease90826
BioCentury BCIQPRMT9
ClinGenPRMT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90826
Chemical/Pharm GKB GenePA165664476
Clinical trialPRMT9
Miscellaneous
canSAR (ICR)PRMT9 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRMT9
EVEXPRMT9
GoPubMedPRMT9
iHOPPRMT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:51:11 CEST 2017

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