Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PRNCR1 (prostate cancer associated non-coding RNA 1)

Identity

Alias_namesPCAT8
prostate cancer associated transcript 8 (non-protein coding)
Other aliasCARLo-3
HGNC (Hugo) PRNCR1
LocusID (NCBI) 101867536
Atlas_Id 53502
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 128092119 and ends at 128104840 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRNCR1   48942
Cards
Entrez_Gene (NCBI)PRNCR1  101867536  prostate cancer associated non-coding RNA 1
AliasesCARLo-3; PCAT8
GeneCards (Weizmann)PRNCR1
Ensembl hg19 (Hinxton)ENSG00000282961 [Gene_View]  chr8:128092119-128104840 [Contig_View]  PRNCR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000282961 [Gene_View]  chr8:128092119-128104840 [Contig_View]  PRNCR1 [Vega]
ICGC DataPortalENSG00000282961
TCGA cBioPortalPRNCR1
AceView (NCBI)PRNCR1
Genatlas (Paris)PRNCR1
WikiGenes101867536
SOURCE (Princeton)PRNCR1
Genetics Home Reference (NIH)PRNCR1
Genomic and cartography
GoldenPath hg19 (UCSC)PRNCR1  -     chr8:128092119-128104840 +  8q24.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRNCR1  -     8q24.21   [Description]    (hg38-Dec_2013)
EnsemblPRNCR1 - 8q24.21 [CytoView hg19]  PRNCR1 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBIPRNCR1 [Mapview hg19]  PRNCR1 [Mapview hg38]
OMIM615452   
Gene and transcription
Genbank (Entrez)AB458446
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)PRNCR1
Cluster EST : UnigeneHs.652970 [ NCBI ]
CGAP (NCI)Hs.652970
Alternative Splicing GalleryENSG00000282961
Gene ExpressionPRNCR1 [ NCBI-GEO ]   PRNCR1 [ EBI - ARRAY_EXPRESS ]   PRNCR1 [ SEEK ]   PRNCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRNCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101867536
GTEX Portal (Tissue expression)PRNCR1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRNCR1
DMDM Disease mutations101867536
Blocks (Seattle)PRNCR1
Human Protein AtlasENSG00000282961
Protein Interaction databases
FunCoupENSG00000282961
BioGRIDPRNCR1
STRING (EMBL)PRNCR1
ZODIACPRNCR1
Ontologies - Pathways
Huge Navigator PRNCR1 [HugePedia]
snp3D : Map Gene to Disease101867536
BioCentury BCIQPRNCR1
ClinGenPRNCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101867536
Clinical trialPRNCR1
Miscellaneous
canSAR (ICR)PRNCR1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRNCR1
EVEXPRNCR1
GoPubMedPRNCR1
iHOPPRNCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:03 CET 2017

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