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PRNT (prion locus lncRNA, testis expressed)

Identity

Alias_symbol (synonym)M8
Other alias
HGNC (Hugo) PRNT
LocusID (NCBI) 149830
Atlas_Id 72223
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 4731282 and ends at 4740668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRNT   18046
Cards
Entrez_Gene (NCBI)PRNT  149830  prion locus lncRNA, testis expressed
AliasesM8
GeneCards (Weizmann)PRNT
Ensembl hg19 (Hinxton)ENSG00000180259 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180259 [Gene_View]  chr20:4731282-4740668 [Contig_View]  PRNT [Vega]
ICGC DataPortalENSG00000180259
TCGA cBioPortalPRNT
AceView (NCBI)PRNT
Genatlas (Paris)PRNT
WikiGenes149830
SOURCE (Princeton)PRNT
Genetics Home Reference (NIH)PRNT
Genomic and cartography
GoldenPath hg38 (UCSC)PRNT  -     chr20:4731282-4740668 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRNT  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblPRNT - 20p13 [CytoView hg19]  PRNT - 20p13 [CytoView hg38]
Mapping of homologs : NCBIPRNT [Mapview hg19]  PRNT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ427539 AJ427540 AL137296 BC137389 BC137390
RefSeq transcript (Entrez)NM_177549
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRNT
Cluster EST : UnigeneHs.126516 [ NCBI ]
CGAP (NCI)Hs.126516
Alternative Splicing GalleryENSG00000180259
Gene ExpressionPRNT [ NCBI-GEO ]   PRNT [ EBI - ARRAY_EXPRESS ]   PRNT [ SEEK ]   PRNT [ MEM ]
Gene Expression Viewer (FireBrowse)PRNT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149830
GTEX Portal (Tissue expression)PRNT
Human Protein AtlasENSG00000180259-PRNT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SH4
Splice isoforms : SwissVarQ86SH4
PhosPhoSitePlusQ86SH4
Domains : Interpro (EBI)PRNT   
Domain families : Pfam (Sanger)PRNT (PF15174)   
Domain families : Pfam (NCBI)pfam15174   
Conserved Domain (NCBI)PRNT
DMDM Disease mutations149830
Blocks (Seattle)PRNT
SuperfamilyQ86SH4
Human Protein Atlas [tissue]ENSG00000180259-PRNT [tissue]
Peptide AtlasQ86SH4
HPRD14086
IPIIPI00218954   
Protein Interaction databases
DIP (DOE-UCLA)Q86SH4
IntAct (EBI)Q86SH4
FunCoupENSG00000180259
BioGRIDPRNT
STRING (EMBL)PRNT
ZODIACPRNT
Ontologies - Pathways
QuickGOQ86SH4
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkPRNT
Atlas of Cancer Signalling NetworkPRNT
Wikipedia pathwaysPRNT
Orthology - Evolution
OrthoDB149830
GeneTree (enSembl)ENSG00000180259
Phylogenetic Trees/Animal Genes : TreeFamPRNT
HOVERGENQ86SH4
HOGENOMQ86SH4
Homologs : HomoloGenePRNT
Homology/Alignments : Family Browser (UCSC)PRNT
Gene fusions - Rearrangements
Tumor Fusion PortalPRNT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRNT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRNT
dbVarPRNT
ClinVarPRNT
1000_GenomesPRNT 
Exome Variant ServerPRNT
ExAC (Exome Aggregation Consortium)ENSG00000180259
GNOMAD BrowserENSG00000180259
Genetic variants : HAPMAP149830
Genomic Variants (DGV)PRNT [DGVbeta]
DECIPHERPRNT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRNT 
Mutations
ICGC Data PortalPRNT 
TCGA Data PortalPRNT 
Broad Tumor PortalPRNT
OASIS PortalPRNT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRNT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRNT
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch PRNT
DgiDB (Drug Gene Interaction Database)PRNT
DoCM (Curated mutations)PRNT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRNT (select a term)
intoGenPRNT
Cancer3DPRNT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRNT
MedgenPRNT
Genetic Testing Registry PRNT
NextProtQ86SH4 [Medical]
TSGene149830
GENETestsPRNT
Target ValidationPRNT
Huge Navigator PRNT [HugePedia]
snp3D : Map Gene to Disease149830
BioCentury BCIQPRNT
ClinGenPRNT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149830
Chemical/Pharm GKB GenePA134909108
Clinical trialPRNT
Miscellaneous
canSAR (ICR)PRNT (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRNT
EVEXPRNT
GoPubMedPRNT
iHOPPRNT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:07 CET 2017

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