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PROB1 (proline rich basic protein 1)

Identity

Alias_namesC5orf65
chromosome 5 open reading frame 65
Other alias
HGNC (Hugo) PROB1
LocusID (NCBI) 389333
Atlas_Id 72236
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139391946 and ends at 139395196 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PROB1   41906
Cards
Entrez_Gene (NCBI)PROB1  389333  proline rich basic protein 1
AliasesC5orf65
GeneCards (Weizmann)PROB1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:139391946-139395196 [Contig_View]  PROB1 [Vega]
TCGA cBioPortalPROB1
AceView (NCBI)PROB1
Genatlas (Paris)PROB1
WikiGenes389333
SOURCE (Princeton)PROB1
Genetics Home Reference (NIH)PROB1
Genomic and cartography
GoldenPath hg38 (UCSC)PROB1  -     chr5:139391946-139395196 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PROB1  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblPROB1 - 5q31.2 [CytoView hg19]  PROB1 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIPROB1 [Mapview hg19]  PROB1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303170 AK316483 AW576390
RefSeq transcript (Entrez)NM_001161546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PROB1
Cluster EST : UnigeneHs.729482 [ NCBI ]
CGAP (NCI)Hs.729482
Gene ExpressionPROB1 [ NCBI-GEO ]   PROB1 [ EBI - ARRAY_EXPRESS ]   PROB1 [ SEEK ]   PROB1 [ MEM ]
Gene Expression Viewer (FireBrowse)PROB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389333
GTEX Portal (Tissue expression)PROB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtE7EW31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE7EW31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE7EW31
Splice isoforms : SwissVarE7EW31
PhosPhoSitePlusE7EW31
Domains : Interpro (EBI)DUF4585   
Domain families : Pfam (Sanger)DUF4585 (PF15232)   
Domain families : Pfam (NCBI)pfam15232   
Conserved Domain (NCBI)PROB1
DMDM Disease mutations389333
Blocks (Seattle)PROB1
SuperfamilyE7EW31
Peptide AtlasE7EW31
IPIIPI00930481   
Protein Interaction databases
DIP (DOE-UCLA)E7EW31
IntAct (EBI)E7EW31
BioGRIDPROB1
STRING (EMBL)PROB1
ZODIACPROB1
Ontologies - Pathways
QuickGOE7EW31
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPROB1
Atlas of Cancer Signalling NetworkPROB1
Wikipedia pathwaysPROB1
Orthology - Evolution
OrthoDB389333
Phylogenetic Trees/Animal Genes : TreeFamPROB1
HOVERGENE7EW31
HOGENOME7EW31
Homologs : HomoloGenePROB1
Homology/Alignments : Family Browser (UCSC)PROB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPROB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PROB1
dbVarPROB1
ClinVarPROB1
1000_GenomesPROB1 
Exome Variant ServerPROB1
ExAC (Exome Aggregation Consortium)PROB1 (select the gene name)
Genetic variants : HAPMAP389333
Genomic Variants (DGV)PROB1 [DGVbeta]
DECIPHERPROB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPROB1 
Mutations
ICGC Data PortalPROB1 
TCGA Data PortalPROB1 
Broad Tumor PortalPROB1
OASIS PortalPROB1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPROB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PROB1
DgiDB (Drug Gene Interaction Database)PROB1
DoCM (Curated mutations)PROB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PROB1 (select a term)
intoGenPROB1
Cancer3DPROB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPROB1
Genetic Testing Registry PROB1
NextProtE7EW31 [Medical]
TSGene389333
GENETestsPROB1
Target ValidationPROB1
Huge Navigator PROB1 [HugePedia]
snp3D : Map Gene to Disease389333
BioCentury BCIQPROB1
ClinGenPROB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389333
Chemical/Pharm GKB GenePA166049072
Clinical trialPROB1
Miscellaneous
canSAR (ICR)PROB1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePROB1
EVEXPROB1
GoPubMedPROB1
iHOPPROB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:37:25 CEST 2017

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